Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08720 444 / 1e-156 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 425 / 4e-149 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT3G17850 184 / 1e-52 Protein kinase superfamily protein (.1) AT5G62310 181 / 7e-52 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G48490 180 / 2e-51 Protein kinase superfamily protein (.1.2.3) AT1G45160 174 / 2e-49 Protein kinase superfamily protein (.1.2) AT3G45780 168 / 3e-47 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT5G58140 166 / 2e-46 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT5G09890 162 / 2e-46 Protein kinase family protein (.1.2) AT5G04510 158 / 8e-46 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025213 [exp] 533 / 0 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 381 / 2e-130 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10036653 [exp] 370 / 3e-125 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10014181 [exp] 283 / 3e-94 AT3G08720 307 / 1e-100 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10022732 [exp] 209 / 2e-65 AT3G08720 401 / 1e-137 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10031332 [exp] 185 / 4e-53 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10038912 [exp] 181 / 8e-52 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005470 [exp] 180 / 1e-51 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10027196 [exp] 180 / 3e-51 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109600 [exp] 447 / 5e-158 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 447 / 5e-158 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G073700 [exp] 378 / 8e-131 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.019G061800 [exp] 213 / 4e-70 AT3G08720 197 / 8e-62 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G044700 [exp] 184 / 1e-52 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.015G035600 [exp] 182 / 3e-52 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.002G263000 [exp] 179 / 5e-51 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G127800 [exp] 179 / 7e-51 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.015G129200 [exp] 177 / 2e-50 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.001G342000 [exp] 169 / 1e-47 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [flax] [poplar] Pkinase_C Protein kinase C terminal domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021386 pacid=23178161 polypeptide=Lus10021386 locus=Lus10021386.g ID=Lus10021386.BGIv1.0 annot-version=v1.0 ATGAAGGTTATGAGGAAGGACAAGATAATGGAGAAGAATCATGTTGAATACATGAAAGCTGAGAGGGACATTTTGACAAAAGTTGACCATCCTTTCATTG TCCAGCTCAAATACTCATTCCAGACAAAATACAGACTGTACCTTGTTTTAGATTTCATAAATGGAGGTCACCTCTTCTTTCAGCTTTATCACCAAGGGCT TTTCAGGGAGGATTTGGCTCGTGTATATGCAGCTGAAATTGTGTCTGCTGTATCCCATCTTCATTCAAACGGCATAATGCATAGAGATCTGAAACCTGAG AATATCTTACTTGGGGAAGATGGCCATGTCATGCTCACTGATTTTGGCCTAGCAAAAGAATTCGACGAAAATACAAGATCAAACTCAATGTGTGGAACTG TTGAATATATGGCACCTGAAATTATTCAAGGGAAGGGCCATGATAAGGCTGCCGATTGGTGGAGTGTAGGTGTTCTGCTGTATGAGATGCTGACTGGCAA GCTGTTACAGAAGGAAGCGGGCAGGCGCCTAGGTTGCGGAGAAAAGGGCAGGCAAGAAATCAAGAACCACAAATGGTTCAAGAAAATCAATTGGAAGAAA CTAGAGGCAAGAGAAGTGCAGCCGAGCTTCCTTCCGAATGTAGATGGGAAGAACTGCACTGCAAACTTTGAGAAGAAATGGACTGACATGCCATTGTCGG ACTCGCCAGCTGCTAGCCCCAAGATCACTGTGGCAAACCCCTTTGGGGACTTTACTTATGTGAGGCCTGCTGCCACTTTTCTTCAGAACTGGTAG
AA sequence Show only first row Show all	>Lus10021386 pacid=23178161 polypeptide=Lus10021386 locus=Lus10021386.g ID=Lus10021386.BGIv1.0 annot-version=v1.0 MKVMRKDKIMEKNHVEYMKAERDILTKVDHPFIVQLKYSFQTKYRLYLVLDFINGGHLFFQLYHQGLFREDLARVYAAEIVSAVSHLHSNGIMHRDLKPE NILLGEDGHVMLTDFGLAKEFDENTRSNSMCGTVEYMAPEIIQGKGHDKAADWWSVGVLLYEMLTGKLLQKEAGRRLGCGEKGRQEIKNHKWFKKINWKK LEAREVQPSFLPNVDGKNCTANFEKKWTDMPLSDSPAASPKITVANPFGDFTYVRPAATFLQNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10021386 [exp]	0	1
AT4G21865			unknown protein		Lus10023724 [exp]	2.4	0.8784
AT5G19070			SNARE associated Golgi protein...		Lus10004421 [exp]	3.7	0.8883
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	14.1	0.8318
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	16.8	0.8462
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	23.8	0.8509
AT5G01800			saposin B domain-containing pr...		Lus10014162 [exp]	25.1	0.8288
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	29.0	0.8066
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10039670 [exp]	30.0	0.8243
AT5G19900			PRLI-interacting factor, putat...		Lus10019670 [exp]	31.2	0.8280
					Lus10018550 [exp]	32.2	0.7973

Compare expression of checked genes

Lus10021386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.