Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 202 / 8e-60 HXXXD-type acyl-transferase family protein (.1) AT1G24430 170 / 1e-47 HXXXD-type acyl-transferase family protein (.1) AT4G15390 169 / 4e-47 HXXXD-type acyl-transferase family protein (.1) AT5G47950 167 / 9e-47 HXXXD-type acyl-transferase family protein (.1) AT3G30280 163 / 4e-45 HXXXD-type acyl-transferase family protein (.1) AT1G24420 152 / 5e-41 HXXXD-type acyl-transferase family protein (.1) AT5G47980 145 / 2e-38 HXXXD-type acyl-transferase family protein (.1) AT5G23970 132 / 5e-34 HXXXD-type acyl-transferase family protein (.1) AT4G15400 122 / 2e-30 HXXXD-type acyl-transferase family protein (.1) AT5G41040 104 / 3e-24 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026013 [exp] 734 / 0 AT3G26040 194 / 5e-57 HXXXD-type acyl-transferase family protein (.1) Lus10021392 [exp] 518 / 0 AT3G26040 184 / 6e-53 HXXXD-type acyl-transferase family protein (.1) Lus10005361 [exp] 495 / 3e-173 AT3G26040 213 / 9e-64 HXXXD-type acyl-transferase family protein (.1) Lus10021391 [exp] 437 / 1e-150 AT3G26040 191 / 2e-55 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 385 / 2e-130 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 293 / 2e-94 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10036042 [exp] 255 / 4e-82 AT4G15390 151 / 1e-42 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 259 / 4e-81 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 253 / 3e-79 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033500 [exp] 281 / 1e-89 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 276 / 3e-88 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 275 / 9e-88 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 263 / 4e-83 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 263 / 4e-83 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 263 / 6e-83 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 262 / 1e-82 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 261 / 3e-82 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 261 / 3e-82 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 258 / 7e-81 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10021387 pacid=23179145 polypeptide=Lus10021387 locus=Lus10021387.g ID=Lus10021387.BGIv1.0 annot-version=v1.0 ATGGAAGTGTACATAGTCTCAGAAGAAAGTGTGAAGCCATCGAAGTATCAAACCCTCGAGCCTTTGAAACTTAGCCTAATGGATCAAGTAACTCCCACAA ACTACACTCCCACCATACTCTTCTACCAAAACAACAACAACCCATACTTCAAAAACCTCGCGAGCCAGCTCAAGTGGTCGCTCTCCGAGACCCTGTCCAT CTACTACCCGCTGGCCGGCAGGGTGAGGGACAACTTTGACATCCGCGACTTCCACGAGGGAGTCCCTTTCATTGAGACCCGTGTCAGGTGCAGGCTGTCT GATTTCCTTCGCGATCAGGGTCTGTACAACGACCGGGTGGAACTTCTCAACGACCTCCTCCCCATGCGTGCAGAGCGCATGCTCCCCGACAGTGTCCCGC AGGTGGCGGTGCAGCTGAATGTGTTTGAGTGTGGTGGGATCGGGCTCGGGATGTGCTTTTCGCACAAAACCCTGGATGGAGTCTCGATGAGTCTGTTCCT CAAGACATGGTCAGCAATCAACAATGCCTACAACAACGACCACCACCACCAGGACGATGGTGTGGTGATGAATAATAAGATTCAATTGCCAGATTTCGCA GAAGGTGCGTTGACTTTTCCTCCCGTTAAGTCTGTGCCTCCTTGCTATGAGCCCGTGATCGAAGGGATTTGGTTTTCGAGTAAAGGGAGTCCTGTCACAA GGCGGTTTGTGTTCGATGCTAACTCGATTTCGGAACTCAAATCGAGAGCTAAGAGCGAAACCATAAAGCATCCAACAACGGCCGATGCACTTTCTGCCTT CATTTGGAAGGCCACAATATCTGCCTACGCATCGTACGGTAACAACAACTACTACGAACCGTCACTGTTATGTCACACTGTTAACCTGAGGAAGCCAACA AGGTCGTGCTTGTCCCGAAGTTCGTTCGGGAACATGGTCCTCTTCACTGCTTCGAGATACGACCCGAAAATCGATGGACATCCCAAACTCGACGACCTCG CCGTACTAGTGAGGAACGAGGTGTCGAAAATGAACAACGAGTACGTGGGGAAGATGTACGGAAGATACGGTTCGCAAGCAGCATTCGACTACTTTGTCCA GTTTTACGAGGCTCACGATGGACGAACAAACGCTTTGAACATATCTTGTTGGTATGAGTTCGGGTTCTGTAAGACCGATTTCGGGTGGGGGCCCGCGGTC TGGGTTGGACTGAGCGGACCAGGTGCCTCGGGGAAAGAAGACTACGGTGTCATGTATTCTACAGATATTGTGGTGCTGGTTGAGAACAATAAAGGCGGAA TCGAGGCGTGGTTCACTTTGGAGGAACCGGGTGTCATGAAGGTGTTGGAAAGCGACCCCGAGTTTTTGAAATTCGCTTCCACGAAATCCGAGATTGTGCC ATGA
AA sequence Show only first row Show all	>Lus10021387 pacid=23179145 polypeptide=Lus10021387 locus=Lus10021387.g ID=Lus10021387.BGIv1.0 annot-version=v1.0 MEVYIVSEESVKPSKYQTLEPLKLSLMDQVTPTNYTPTILFYQNNNNPYFKNLASQLKWSLSETLSIYYPLAGRVRDNFDIRDFHEGVPFIETRVRCRLS DFLRDQGLYNDRVELLNDLLPMRAERMLPDSVPQVAVQLNVFECGGIGLGMCFSHKTLDGVSMSLFLKTWSAINNAYNNDHHHQDDGVVMNNKIQLPDFA EGALTFPPVKSVPPCYEPVIEGIWFSSKGSPVTRRFVFDANSISELKSRAKSETIKHPTTADALSAFIWKATISAYASYGNNNYYEPSLLCHTVNLRKPT RSCLSRSSFGNMVLFTASRYDPKIDGHPKLDDLAVLVRNEVSKMNNEYVGKMYGRYGSQAAFDYFVQFYEAHDGRTNALNISCWYEFGFCKTDFGWGPAV WVGLSGPGASGKEDYGVMYSTDIVVLVENNKGGIEAWFTLEEPGVMKVLESDPEFLKFASTKSEIVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021387 [exp]	0	1
					Lus10024934 [exp]	1.0	0.8294
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10013958 [exp]	5.2	0.6565
AT4G30590		AtENODL12	early nodulin-like protein 12 ...		Lus10019955 [exp]	6.9	0.6894
					Lus10014650 [exp]	7.1	0.6941
AT2G21100			Disease resistance-responsive ...		Lus10034476 [exp]	12.7	0.5670
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	16.0	0.6742
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	17.9	0.6742
					Lus10011962 [exp]	19.6	0.6742
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	21.2	0.6742
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10001298 [exp]	21.2	0.6346

Compare expression of checked genes

Lus10021387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.