Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29635 255 / 1e-79 HXXXD-type acyl-transferase family protein (.1) AT5G39090 243 / 4e-75 HXXXD-type acyl-transferase family protein (.1) AT5G39080 241 / 5e-74 HXXXD-type acyl-transferase family protein (.1) AT3G29590 239 / 2e-73 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39050 236 / 4e-72 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29670 232 / 7e-71 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT3G29680 210 / 2e-62 HXXXD-type acyl-transferase family protein (.1) AT5G61160 210 / 2e-62 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT1G03495 194 / 2e-56 HXXXD-type acyl-transferase family protein (.1) AT1G03940 190 / 1e-54 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020514 [exp] 587 / 0 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 572 / 0 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 521 / 0 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 483 / 5e-168 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 322 / 6e-105 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 310 / 2e-100 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 288 / 3e-92 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 280 / 4e-88 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 265 / 3e-83 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 353 / 2e-117 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 342 / 3e-113 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 340 / 2e-112 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 319 / 3e-104 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 319 / 5e-104 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 318 / 9e-104 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 317 / 2e-103 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 311 / 3e-101 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 311 / 4e-101 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 310 / 1e-100 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10021388 pacid=23179229 polypeptide=Lus10021388 locus=Lus10021388.g ID=Lus10021388.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCGCCGCAGCCAGCTCGCTCAACAACGTCTCGCATAGAGATCTGCAACATAACTCCGGCACGGTCGAAATCATCACCGGCCACCGATTTCG CCCTACCGCTCACTCTATTCGACACATTCTGGCTCAAAACTTCCCCCGTGGAGCGAATCTTCTTCTACAGATTCCCCTCTCCTCCAGCCGCCACGTCATC ATCATCCTCCGACGTCATCATCCCTCGGCTGAAGCGCTCCCTCTCACTCGCCCTCCGCCACTTCGTCCCACTCGCCGGGAAACTCACCTGGCCGGAAAAC GCCGAGGTCCCTTTCCTGCTCTACACGCCACCAAACGACGGCGTTTCGTTGACAGTCGCGGAGTCAACGGACGAACACAGCTTTGATCGAGATGGGCCCC GCGACTCGAGTCTCTCGCGCGCCTACGTGCCGAAGCTCGACATTTCGAGATCGAACGCTGCCGTTTTGGCCCTGCAGGTGACGATGTTCCGTCAGGGATT TTGCATTGCCGTTACGTCTCATCACGCTGTTCTCGACGGGAAAAGCAGTATGATGTTTATGAAGGCTTGGGCACACGTTAGCAGGGAGTTGGGTAACGGC GTTGGCGATGGAGGGGACTTGACGGAGGAGTTGATGCCATTTCTTGATCGGACGGTTGTGAACGATCCGGACGGAATAGCGGTTAGAGATGCGATGACCT GGATGGCTAATACTGATAGTTATCCTAGATGTTTGGAGCTGTTGCCAGAGACAATTCCTATCGGTACCGTGCCAAATCAGGTGCGAAGAACATTCATGCT GTCTCGACAAGACATCAACAGACTCAAAAAAAACATACAACACCAAATCGAAACGAGCCATAACGATGGTCGCCAACCAAACGAACCGAGTAGCATGTCG ACGTTCGTCGTAACTTACGCGTACGCGTTGGTATGCTTTGCAAAAGCCACCAGATTTGACTACGACGTCGATGACAAAGCTCTGGTGTTCACTTTCACTG CCGACTGCAGATCAAGGTTAGACCCTCCGTTGCCTTCCAACTACTTCGGAAACTGCATCATGGCCTTTGCATCTCCCGCCATGAAATTTGGAGATTTGGT GCATGAGAACGGGGTCGCACGTGTCGCTCGCACAATTATTGAGGTAATAAAGGAGTTAGAACAAAATGTCCTTGTTGGAGCCAAGGGGAGGCTAGGGAGG TACTTGAACTTCCGTCTGTCGACAAAAAATAAGCATGAACTACCTATCTGGGTGGGCGTGGCCGGATCTCCCCGATTCGGAGTTTACGAGATTGATTTTG GATTCGGCCAACCGGAGAAGGTGGAGATCACGTCGATAGACAGATCTCCGTCCATATCCATGGCGGAGAGTGGTGACGGAGTTAGTGGCGGCGTTGAAGT TGGCGTGGTTTTGTTGATGCATGAGATGGACAAGTTTGCCTCAGCCTTTTCTGATGGGCTCAAAGACACTTAA
AA sequence Show only first row Show all	>Lus10021388 pacid=23179229 polypeptide=Lus10021388 locus=Lus10021388.g ID=Lus10021388.BGIv1.0 annot-version=v1.0 MASSPQPARSTTSRIEICNITPARSKSSPATDFALPLTLFDTFWLKTSPVERIFFYRFPSPPAATSSSSSDVIIPRLKRSLSLALRHFVPLAGKLTWPEN AEVPFLLYTPPNDGVSLTVAESTDEHSFDRDGPRDSSLSRAYVPKLDISRSNAAVLALQVTMFRQGFCIAVTSHHAVLDGKSSMMFMKAWAHVSRELGNG VGDGGDLTEELMPFLDRTVVNDPDGIAVRDAMTWMANTDSYPRCLELLPETIPIGTVPNQVRRTFMLSRQDINRLKKNIQHQIETSHNDGRQPNEPSSMS TFVVTYAYALVCFAKATRFDYDVDDKALVFTFTADCRSRLDPPLPSNYFGNCIMAFASPAMKFGDLVHENGVARVARTIIEVIKELEQNVLVGAKGRLGR YLNFRLSTKNKHELPIWVGVAGSPRFGVYEIDFGFGQPEKVEITSIDRSPSISMAESGDGVSGGVEVGVVLLMHEMDKFASAFSDGLKDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10021388 [exp]	0	1
AT3G44590			60S acidic ribosomal protein f...		Lus10026714 [exp]	1.0	0.8971
AT1G15780			unknown protein		Lus10015321 [exp]	6.2	0.8879
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10022627 [exp]	10.2	0.8521
AT1G23850			unknown protein		Lus10014532 [exp]	11.1	0.8047
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	11.8	0.8896
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10008264 [exp]	12.4	0.8631
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10031675 [exp]	13.4	0.8610
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10002934 [exp]	18.5	0.8198
AT5G42785			unknown protein		Lus10002541 [exp]	19.3	0.8765
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10005999 [exp]	22.4	0.8808

Compare expression of checked genes

Lus10021388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.