Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29590 224 / 6e-68 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT3G29635 223 / 2e-67 HXXXD-type acyl-transferase family protein (.1) AT5G39090 219 / 7e-66 HXXXD-type acyl-transferase family protein (.1) AT3G29670 215 / 2e-64 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G39080 213 / 2e-63 HXXXD-type acyl-transferase family protein (.1) AT5G39050 202 / 2e-59 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT5G61160 196 / 4e-57 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 191 / 2e-55 HXXXD-type acyl-transferase family protein (.1) AT1G03495 160 / 1e-43 HXXXD-type acyl-transferase family protein (.1) AT1G03940 157 / 1e-42 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005362 [exp] 529 / 0 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 527 / 0 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 522 / 0 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 485 / 6e-169 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 292 / 1e-93 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 279 / 2e-88 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 276 / 6e-87 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 256 / 8e-80 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 248 / 1e-76 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 321 / 4e-105 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 313 / 7e-102 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 308 / 5e-100 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 287 / 9e-92 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 286 / 2e-91 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 285 / 3e-91 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 284 / 1e-90 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 283 / 2e-90 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G096066 [exp] 283 / 2e-90 AT5G39050 273 / 2e-86 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 280 / 3e-89 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10021389 pacid=23179138 polypeptide=Lus10021389 locus=Lus10021389.g ID=Lus10021389.BGIv1.0 annot-version=v1.0 ATGTCAACAATTCGAATTATTGAAATCTCTAAAGTAACTCCGTCGCCGCTTCCAACCTCCTCTTTCTCTTTGCCGCTCACTTTCTTCGACTCTTTTTGGC TCAAATTCGCCCCCGTGAAACGAATCTTCTTATATCGTCTCCCTTCCTCCTCCTCCTCTTCATCCTTCTTGAGTGACGTCATCCTTCCGCGGCTAAAGCA CTCCCTCTCCTTCGTCCTCGGCCGTTTCCTCCCGCTCGCCGGAAAACTCACCTGGCCGGAAAATGATGACGTCCCCTTCATCCTCTACACGCCACAACAG GATGCCGTTTCACTAACCATCGCCGAGTCAACGGATGAACAAATATTTGACCTCCTCTCGAGGGATGGGCACCGCGAGGCCAGCCTATCGTCGAGCCTCG TGCCGAAGCTCGACGTTTCGGGGTCTAACGCTGCCGTTTTGGCCTTGCAGGTGACGGTTTTTCCACGTCAAGGGTTCTGCGTGGGCATCACTTCTCATCA CGGCGTTCTCGACGGGAAGAGCTCCGTTATGTTTATGAAGGCGTGGGCGCATGTTAGCAAGGAGGAGTTGGGTAACGGTGGTGAGTTGACGGAGGCGCTA ACGCCTTTTCTTGATCGGACGGTCGTGAAGGATCCTGATGGGATCGCCTTGGAAGACTTCAAGACTTGGATGGCTTCCAACAAGACTAATAATTCTAGGA GTTTGGAATTAATGGAGACTGTTCCTGCCGGCAACACAAAGGTACAAGGAACATTTAAGTTGTTACGAGAACACATCAATAAACTGAAGAAAAGTGTACA ACAACAGTACCAATTATTCCAAGGTTATAACCGAGCGACAATCGAACCGAAAAGGTTATCGAGTTTCGTCGTGACTTTTGCGCACACGTTAGTATGCATG GCGAAAGCCAGAAGAGTGGTAGACGCCGACGACGATAAATTTGCAAAGTTCGGAATTCCGGCGGATTGCCGATCGAGACTGGACCCGCCATTGCCTCCCA ACTATTTTGGGAACTGCGTCGTGATATTTGTATCTCCCGTCGTGAAGATCGGAGATTTGGTCCACCATGGCGGCATCGCACGTGTGGCTCACATGACTAT GGAGATGATAAAGAAGTTAGATCAAGATGCTCTTGACGGAGCCAAGGGGAAGCTAGGGAGGCTCTTCGATCCGGCACCTGCAAAGAAAGAGGAGGTGCTC CTCGCGGTTACCGTCGCCGGCTCGCCTCGGTTTGGGGAATACGATGTCGATTTTGGATTAGGCAGGCCGGAGAAGGTGGAGATAACGTCGATAGATAGAA GTACGACGGGTATGTCCATGGTGGAGAGCGGCGATGGAAGCGGCGGTGTTGAAGTTGGGGTGGTTATGTTGAAACATGAGATGGACAAGTTTGCCTCTTT GTTCGTTGATGGGCTAAAAGACACCTAA
AA sequence Show only first row Show all	>Lus10021389 pacid=23179138 polypeptide=Lus10021389 locus=Lus10021389.g ID=Lus10021389.BGIv1.0 annot-version=v1.0 MSTIRIIEISKVTPSPLPTSSFSLPLTFFDSFWLKFAPVKRIFLYRLPSSSSSSSFLSDVILPRLKHSLSFVLGRFLPLAGKLTWPENDDVPFILYTPQQ DAVSLTIAESTDEQIFDLLSRDGHREASLSSSLVPKLDVSGSNAAVLALQVTVFPRQGFCVGITSHHGVLDGKSSVMFMKAWAHVSKEELGNGGELTEAL TPFLDRTVVKDPDGIALEDFKTWMASNKTNNSRSLELMETVPAGNTKVQGTFKLLREHINKLKKSVQQQYQLFQGYNRATIEPKRLSSFVVTFAHTLVCM AKARRVVDADDDKFAKFGIPADCRSRLDPPLPPNYFGNCVVIFVSPVVKIGDLVHHGGIARVAHMTMEMIKKLDQDALDGAKGKLGRLFDPAPAKKEEVL LAVTVAGSPRFGEYDVDFGLGRPEKVEITSIDRSTTGMSMVESGDGSGGVEVGVVMLKHEMDKFASLFVDGLKDT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10021389 [exp]	0	1
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10024218 [exp]	1.0	0.8766
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006248 [exp]	2.8	0.8671
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10012611 [exp]	5.7	0.8416
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	8.5	0.8545
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027725 [exp]	10.4	0.8201
AT1G71680			Transmembrane amino acid trans...		Lus10037052 [exp]	10.6	0.8319
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10002691 [exp]	11.5	0.8392
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10037598 [exp]	12.0	0.8396
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027727 [exp]	14.0	0.7993
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10037367 [exp]	14.2	0.7621

Compare expression of checked genes

Lus10021389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.