Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29590 283 / 7e-91 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT3G29635 281 / 7e-90 HXXXD-type acyl-transferase family protein (.1) AT5G39050 275 / 2e-87 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29670 274 / 4e-87 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G39080 272 / 4e-86 HXXXD-type acyl-transferase family protein (.1) AT5G39090 271 / 5e-86 HXXXD-type acyl-transferase family protein (.1) AT5G61160 250 / 6e-78 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 234 / 7e-72 HXXXD-type acyl-transferase family protein (.1) AT1G03495 217 / 5e-65 HXXXD-type acyl-transferase family protein (.1) AT1G03940 214 / 4e-64 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021389 [exp] 601 / 0 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 556 / 0 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 550 / 0 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 503 / 3e-176 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 374 / 2e-125 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 366 / 3e-122 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 346 / 6e-114 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 308 / 7e-100 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 307 / 1e-99 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 409 / 3e-139 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 394 / 1e-133 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 391 / 2e-132 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 368 / 2e-123 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 367 / 3e-123 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 367 / 4e-123 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 365 / 5e-122 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 364 / 9e-122 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.009G019700 [exp] 345 / 2e-114 AT3G29590 304 / 1e-98 HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 341 / 9e-113 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10021390 pacid=23179209 polypeptide=Lus10021390 locus=Lus10021390.g ID=Lus10021390.BGIv1.0 annot-version=v1.0 ATGTCAACAATTCGAATTATCGAAATTTGTCACGTGGCTCCGTTGCCAATTCCGGCCTCCGATTTCTCCTTGCCGCTCAGTTGCTTCGACTCCTTCTGGC TCAAATTTCCCCCCACCGAACGAATCTTCTTCTACCGCCTATCCTCCTCAACCGACATCATCATGCCGCGGCTGAAGCGCTCCCTCTCTCTCACCCTCCG CCATTTCCTCCCGCTTGCCGGAAAAATCACCTGGCCAGAAAATGCCGACGTCCCCTTCATCCTCTACACCCCTAACGACGTCGTTTCATTAACCATCGCC GAGTCGACGGATGATTTTGAGCTCGTCTCGGGTGATCGTCCCCGAGACCTCAACCTGTCGCGCTCTTATGTACCGAAGCTCCACGTGTCGGGGTCGAACG CTGCCATTTTCGCCCTGCAGGTGACGCTATTCCCACGACAGCAGGGACTCTGCGTCGGGCTCACTGATCACCACGGCTTTGTCGACGGGAAGAGCTACAC TATGTTTATCAAAGCGTGGGCCCATGTTAGCAAGGAGTTGGGTAACGGTGACGGTGACGGTGACGGATGCGAGTTGACGGAGGCCCTGACGCCGTTTCTT GATCGGACGGTCTTGAAGGATCCTGATGGGATCGCCTTGGAAGACTTCAAGACTTGGATGGCTTTGAACAAGACTGATAATCCTAAGAGTTTGGAGATGA TGCCGAAGTGGTCCTCAAATGTTCCTACCGGTACAACTCAGGTACGAGGAACATTCAAACTGTCACGACAAGACATCTGCAAACTAAAAGAAAAGGTGCA ACAATACCAACTCGACAATTACGACCAATCAGCAGCAATCGAACCGAACAAGTTGTTGTCGAGTTTCGTCGTGAGTTTCGCGCACACCGTGGTATGCATG GCGAAAGCCAAAAGGGAGGTAGACGCCGACGATGACAAAGTTGTAAAGCTCAGACTCTCGGCGGATTGCAGATCGAGACTGAACCCGCCGTTGCCTTCCA ACTATTTTGGAAACTGCATCGTGGCATTTTCCGATTCCGGCATGAAACTTAGAGAGTTGGTGCACTACGGTGGTATTGCACGTGTGGCTCACGCGACTAT CAAGATGATAAAGACATTAGATCACAATGTTCTTGATGGAGCCAAAGGGAAGCTAGGGAGGTTCGTCAGCCAGACACTGGCAAAGAAAGAGGAGGTGTTC ATGATGGTTGGGGTTGCCGGTTCGACCCGGTTCGAGGAATACGGTGTTGATTTTGGATTCGGCAGGCCAGTGAAGGTGGAGATAGCGTCGATAGATAGAA ATACCATGTCCATGGTGGAGAGCCGCGACGGAAGCGGCAGCGTTGAAGTTGGTGTGGTTATGTTGAGGCATGAGATGGACAAGTTTGCCTCTTTGTTCGT TGATGGGCTAGAAAACACCTGA
AA sequence Show only first row Show all	>Lus10021390 pacid=23179209 polypeptide=Lus10021390 locus=Lus10021390.g ID=Lus10021390.BGIv1.0 annot-version=v1.0 MSTIRIIEICHVAPLPIPASDFSLPLSCFDSFWLKFPPTERIFFYRLSSSTDIIMPRLKRSLSLTLRHFLPLAGKITWPENADVPFILYTPNDVVSLTIA ESTDDFELVSGDRPRDLNLSRSYVPKLHVSGSNAAIFALQVTLFPRQQGLCVGLTDHHGFVDGKSYTMFIKAWAHVSKELGNGDGDGDGCELTEALTPFL DRTVLKDPDGIALEDFKTWMALNKTDNPKSLEMMPKWSSNVPTGTTQVRGTFKLSRQDICKLKEKVQQYQLDNYDQSAAIEPNKLLSSFVVSFAHTVVCM AKAKREVDADDDKVVKLRLSADCRSRLNPPLPSNYFGNCIVAFSDSGMKLRELVHYGGIARVAHATIKMIKTLDHNVLDGAKGKLGRFVSQTLAKKEEVF MMVGVAGSTRFEEYGVDFGFGRPVKVEIASIDRNTMSMVESRDGSGSVEVGVVMLRHEMDKFASLFVDGLENT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10021390 [exp]	0	1
					Lus10002332 [exp]	3.3	1.0000
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	4.7	1.0000
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	5.7	1.0000
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	6.6	1.0000
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	7.4	1.0000
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10014056 [exp]	8.1	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10031075 [exp]	8.8	1.0000
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10033189 [exp]	9.4	1.0000
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10033628 [exp]	9.9	1.0000
AT2G31750		UGT74D1	UDP-glucosyl transferase 74D1 ...		Lus10009409 [exp]	10.5	1.0000

Compare expression of checked genes

Lus10021390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.