Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 170 / 9e-48 HXXXD-type acyl-transferase family protein (.1) AT1G24430 155 / 3e-42 HXXXD-type acyl-transferase family protein (.1) AT3G30280 150 / 2e-40 HXXXD-type acyl-transferase family protein (.1) AT4G15390 147 / 4e-39 HXXXD-type acyl-transferase family protein (.1) AT5G47950 133 / 3e-34 HXXXD-type acyl-transferase family protein (.1) AT1G24420 121 / 7e-30 HXXXD-type acyl-transferase family protein (.1) AT5G23970 115 / 4e-28 HXXXD-type acyl-transferase family protein (.1) AT5G47980 115 / 5e-28 HXXXD-type acyl-transferase family protein (.1) AT5G41040 94 / 1e-20 HXXXD-type acyl-transferase family protein (.1.2) AT2G19070 88 / 1e-18 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021392 [exp] 437 / 7e-151 AT3G26040 184 / 6e-53 HXXXD-type acyl-transferase family protein (.1) Lus10005361 [exp] 426 / 4e-146 AT3G26040 213 / 9e-64 HXXXD-type acyl-transferase family protein (.1) Lus10026013 [exp] 422 / 2e-144 AT3G26040 194 / 5e-57 HXXXD-type acyl-transferase family protein (.1) Lus10021387 [exp] 416 / 2e-142 AT3G26040 206 / 3e-61 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 364 / 5e-122 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1) Lus10036042 [exp] 241 / 1e-76 AT4G15390 151 / 1e-42 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 233 / 2e-71 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 211 / 1e-62 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10028814 [exp] 208 / 9e-62 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034100 [exp] 272 / 2e-86 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 269 / 4e-85 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 267 / 1e-84 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 238 / 1e-73 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 232 / 4e-71 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 232 / 4e-71 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 232 / 7e-71 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 232 / 7e-71 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 231 / 1e-70 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 230 / 3e-70 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10021391 pacid=23179159 polypeptide=Lus10021391 locus=Lus10021391.g ID=Lus10021391.BGIv1.0 annot-version=v1.0 ATGGAAGTCTCAATACTCTCGAGGGAAATCATAAAGCCATCAAATCTCAACATCCAACGTCTACCGCCATTGAAGCTCAACCTCTTAGACCAACTAACTC CCTCAAGCTACTCTCCACTCATACTCTTCTACCAAAACAATCACAAAAACCACAAAACAAACACTTTCCAAATCACCAAACAACTCAAATGGTCACTCTC CCAAGCACTAACCCTGCACTACCCTGTGGGCGGCAGGGTTAGGGACAATTTCGTCATTGACGACTTCTGCGAGGGCATCCCTTTCGTCGAAGCTCGTGTC AAGTGCAAGCTATGTGATTTCCTGTATTACCAAGATGGTAGTGACTGTGATCATGATCATATTGGCGTGGACATGGTCAACAACCTCCTCCCTTTGCGGG CCCAGCGTCTGGTCCTGGATGATGCTGGCCCGCAAATAGTTGTGCAGTTGAACGTGTTTGACTGTGGGGGTTTGGCTCTGGCGTTTTGTAGCTTGCACAA GACCCTAGACGGAGTTGCGGCTAGAGGGTTGCTGAAGACTTGGTCGACCCTTAATAGTGGGCGAACCGATGATAATAACCAGATGGTCCAACCGGATTTC TCGGAAGGGAATTCGACATTCCCACCTATGAGGTCCTTACCGCCTCACTACGTTTCTCTGACGAGAAGAGAATGGTTTGGAAATGGAAAATTGGGCGAGC CGGTGACTAGAAGGTTCGTGTTCGATGCAGAGTCTGTCTCGATGCTGAGAGCGAAGGCTAGAAGTGGAAACCTAGAGAACCCAACTCGAGCCGAGGCAGT CTCATCTCTGCTGTGGAAAGCCACCATGGCATACACAGAGAGTAAGGAAAGTAGTTATAAACCGTCCATCCTGTCTCAGACCGTGGATCTGAGGAGGCTG ACAAGGCCGCGCCTCTCGAGGTATGCGTTCGGGAACGCGATCCTGTTTTCAGATTCTATCTACAACCCCGAGATCCATGGCGAACCACCAAGGATCGAGG TCCTAGCCGAGCTGGTGAGGGACGGAGTGTCGAAAGTCGACCGTGACTACGTGAGAAAGATTTCGGGGGAACTCGGATCGAGGATGATACTCGAGTACTT CGACCAACAGGCGGAGACCGAGAACGAAGAAATGAACGCGCTCAACGTGGCGTGTTTGCACGGGCTCGGTATGGGTAAGATTGATTTCGGTTGGGGACCA ACGGTTTGGGTTGCGTTGGGCGGACCGGGTAAGCCTTCGGGTGGCGGCGACGACATGCCGTTTTTGTTCAATGCAGCGACTCTTGTGGATAATAATAAAG GTGGGATAGAGGCTTGGCTGACAGTGAAGGATCCAGCTATGATGAAGGCATTGGAAAACAACTTGGAATTCTTGGATTTTGTTTCCACTAAATCTACCAT TTTACCATGA
AA sequence Show only first row Show all	>Lus10021391 pacid=23179159 polypeptide=Lus10021391 locus=Lus10021391.g ID=Lus10021391.BGIv1.0 annot-version=v1.0 MEVSILSREIIKPSNLNIQRLPPLKLNLLDQLTPSSYSPLILFYQNNHKNHKTNTFQITKQLKWSLSQALTLHYPVGGRVRDNFVIDDFCEGIPFVEARV KCKLCDFLYYQDGSDCDHDHIGVDMVNNLLPLRAQRLVLDDAGPQIVVQLNVFDCGGLALAFCSLHKTLDGVAARGLLKTWSTLNSGRTDDNNQMVQPDF SEGNSTFPPMRSLPPHYVSLTRREWFGNGKLGEPVTRRFVFDAESVSMLRAKARSGNLENPTRAEAVSSLLWKATMAYTESKESSYKPSILSQTVDLRRL TRPRLSRYAFGNAILFSDSIYNPEIHGEPPRIEVLAELVRDGVSKVDRDYVRKISGELGSRMILEYFDQQAETENEEMNALNVACLHGLGMGKIDFGWGP TVWVALGGPGKPSGGGDDMPFLFNAATLVDNNKGGIEAWLTVKDPAMMKALENNLEFLDFVSTKSTILP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021391 [exp]	0	1
AT1G49960			Xanthine/uracil permease famil...		Lus10006134 [exp]	8.5	0.8086
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	9.6	0.8331
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Lus10039436 [exp]	10.5	0.8163
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010467 [exp]	14.6	0.6361
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Lus10019869 [exp]	16.9	0.6171
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	17.4	0.7790
AT5G14230			unknown protein		Lus10036990 [exp]	17.8	0.8198
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	17.9	0.8235
AT2G45220			Plant invertase/pectin methyle...		Lus10027206 [exp]	18.4	0.7700
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10005361 [exp]	18.5	0.7745

Compare expression of checked genes

Lus10021391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.