Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 152 / 3e-41 HXXXD-type acyl-transferase family protein (.1) AT1G24420 145 / 1e-38 HXXXD-type acyl-transferase family protein (.1) AT5G47950 138 / 3e-36 HXXXD-type acyl-transferase family protein (.1) AT4G15390 129 / 8e-33 HXXXD-type acyl-transferase family protein (.1) AT5G47980 128 / 2e-32 HXXXD-type acyl-transferase family protein (.1) AT3G30280 127 / 3e-32 HXXXD-type acyl-transferase family protein (.1) AT1G24430 119 / 3e-29 HXXXD-type acyl-transferase family protein (.1) AT5G23970 114 / 9e-28 HXXXD-type acyl-transferase family protein (.1) AT4G15400 111 / 1e-26 HXXXD-type acyl-transferase family protein (.1) AT3G48720 76 / 1e-14 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021387 [exp] 491 / 4e-172 AT3G26040 206 / 3e-61 HXXXD-type acyl-transferase family protein (.1) Lus10005361 [exp] 489 / 3e-171 AT3G26040 213 / 9e-64 HXXXD-type acyl-transferase family protein (.1) Lus10026013 [exp] 477 / 1e-166 AT3G26040 194 / 5e-57 HXXXD-type acyl-transferase family protein (.1) Lus10021391 [exp] 423 / 2e-145 AT3G26040 191 / 2e-55 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 365 / 5e-123 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1) Lus10036042 [exp] 249 / 4e-80 AT4G15390 151 / 1e-42 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 247 / 6e-77 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 230 / 2e-70 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 218 / 8e-66 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033500 [exp] 233 / 1e-71 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 229 / 3e-70 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 220 / 8e-67 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 215 / 8e-65 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 215 / 8e-65 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 214 / 3e-64 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 214 / 3e-64 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 214 / 3e-64 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 213 / 6e-64 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 199 / 1e-58 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10021392 pacid=23179224 polypeptide=Lus10021392 locus=Lus10021392.g ID=Lus10021392.BGIv1.0 annot-version=v1.0 ATGCAACCTCCATTAAAGCTCAACCTGCTAGACCAGCTAACTCCGACGAGCTATTCTCCGGCCATACTCTTCTTCCGAAACGACTCCGCGGGAGGCCACT TCAAAATCAACAACATCTCCCAAATCTCGAACCGGCTAAAACGGTCCCTCTCCCTAACCCTAACCGACTACTACCCGTTGGCCGGTAGGATCAGGGACAA CTTCACCATCCACGACTTCCACGAAGGGGCCCCGTTCATCGAAACCCGCGTCAGATGCCACATGTCGGATTTCCTCCAAGACCAGGGTTGTAGTAGTGAT CGCCTGGAATTACTCAACAACCTCCTCCCCGTCAGGGCTGAGCGCCTGGCTCCGGACACGGGCCCGCAGGTGGCTGTACAGCTCAACGTGTTCGAATGTG GCGGGTTGGCGATAGGGTTGTGCTCCTCCCACAAGAGCCATGACGGCACCGTGGTGAGCTCCTTCGTGGCAAGTTGGGCAACAAATTACAGGCATGTCAG CGATACCAGCCACGTCAGCAAAAAAATCATCACCCCGAACTTCTCGGAAGGTGTGTCGGCTTTCCCGCCTGTACGGTCAATACCACCACACTACACATCT CTTTCTGAAGACGTTTGGTTCGGGTCAAAAGGTGAGCCGGTTAACAGGAGGTTCGTGTTCGACTCAGAGTCAGTTTCGAAACTGAGGCTGAAAGCCAAGA GCCGGACCCTCGAGAACCCTACCCGGGCCGAAGCGCTCTCGGCTTTCATATGGAAGTCAATCATATCCGCATCAGCATCACATGCCAAAACTAACTATCA ATCATCGCTCATGTGCCAGGCTGTCGATCTGAGGCGGCTAATAAGGCCGCGTTTGTCGAGGCGTTCGTTTGGGAACCTCGTTCTGACGGCGGATTCGAAG TACAATCCGAGCGTTGATGGCGAACCGAGGACGGACAGTCTTGCACTATTGGCGAGGAACTCGATGTCTAAAATGGACATCGAGTTCCTTGAACAGTTCA TGGGGGAAGGCGGATCGGGTGCCATGTTCGACTACTTGGATCACGATGCAGAGACTACGAACGAAGCAACAAGCATACTGAATGTAGCGTGTTGGCACGG GTTCGGTTTGAGTAAGATCGATTTCGGGTTGGGACCCGCAGTTTGGGTCGCACTGAGCGGGCCGGGAGTCTCGGGGAAAGAGGATTTCGGAGTCAAGTAT ATTTCAGACACGGTCATTCTGGTCGAGAACAATAAAAGCGGAATCGAGGCGTGGTTGACCCTGGACGAACCGGGTGTGATGAAAGCATTGGAAAATGATC AAGAATTCTTGGAATTTGCATCCACAAATTCTCCTATCTTATAA
AA sequence Show only first row Show all	>Lus10021392 pacid=23179224 polypeptide=Lus10021392 locus=Lus10021392.g ID=Lus10021392.BGIv1.0 annot-version=v1.0 MQPPLKLNLLDQLTPTSYSPAILFFRNDSAGGHFKINNISQISNRLKRSLSLTLTDYYPLAGRIRDNFTIHDFHEGAPFIETRVRCHMSDFLQDQGCSSD RLELLNNLLPVRAERLAPDTGPQVAVQLNVFECGGLAIGLCSSHKSHDGTVVSSFVASWATNYRHVSDTSHVSKKIITPNFSEGVSAFPPVRSIPPHYTS LSEDVWFGSKGEPVNRRFVFDSESVSKLRLKAKSRTLENPTRAEALSAFIWKSIISASASHAKTNYQSSLMCQAVDLRRLIRPRLSRRSFGNLVLTADSK YNPSVDGEPRTDSLALLARNSMSKMDIEFLEQFMGEGGSGAMFDYLDHDAETTNEATSILNVACWHGFGLSKIDFGLGPAVWVALSGPGVSGKEDFGVKY ISDTVILVENNKSGIEAWLTLDEPGVMKALENDQEFLEFASTNSPIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	0	1
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	1.0	0.8695
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016918 [exp]	1.7	0.8376
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10003110 [exp]	2.0	0.8406
					Lus10033046 [exp]	3.2	0.8118
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Lus10039436 [exp]	7.2	0.8373
AT2G45220			Plant invertase/pectin methyle...		Lus10027206 [exp]	7.4	0.8117
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10021015 [exp]	9.5	0.8268
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10039704 [exp]	10.4	0.7781
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000217 [exp]	13.2	0.7548
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10005361 [exp]	14.5	0.7831

Compare expression of checked genes

Lus10021392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.