Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19070 316 / 1e-104 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G48930 201 / 2e-60 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 162 / 2e-45 HXXXD-type acyl-transferase family protein (.1) AT5G23940 139 / 8e-37 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT3G48720 131 / 3e-34 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 130 / 1e-33 HXXXD-type acyl-transferase family protein (.1) AT5G41040 128 / 5e-33 HXXXD-type acyl-transferase family protein (.1.2) AT5G42830 103 / 2e-24 HXXXD-type acyl-transferase family protein (.1) AT5G07080 100 / 4e-23 HXXXD-type acyl-transferase family protein (.1) AT5G01210 99 / 2e-22 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005360 [exp] 672 / 0 AT2G19070 424 / 9e-146 spermidine hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 436 / 1e-151 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10021394 [exp] 434 / 1e-150 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10001282 [exp] 373 / 5e-126 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10026097 [exp] 225 / 2e-69 AT5G48930 599 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 205 / 6e-62 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 199 / 1e-59 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 197 / 5e-59 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10002321 [exp] 194 / 2e-57 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G165200 [exp] 351 / 2e-118 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G109900 [exp] 347 / 1e-116 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 229 / 5e-71 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 226 / 6e-70 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 225 / 8e-70 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 219 / 2e-67 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 218 / 5e-67 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 210 / 1e-63 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.014G166600 [exp] 149 / 1e-40 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G147300 [exp] 138 / 1e-36 AT5G23940 578 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10021393 pacid=23179166 polypeptide=Lus10021393 locus=Lus10021393.g ID=Lus10021393.BGIv1.0 annot-version=v1.0 ATGTTCATCGAGGCGGTGGCTGAAACGACGTCGTTGGATGAGCTGGGAGAGAGTGGTACTGGGGGTGTTGCGTCTGCTGGGGCCGGACTCATGTCCGGTT GCAGTAACAATGATTTTCAGCCGTTGATTCCGAACGTGGACTACACGCGTCCGATCAGCGAGTGGCCGTTGTTGCTGGTCCAGCTCACTGAGTTTAGCTG CGGTTCGTTGAGCTTGTGCTTCTACATGTCTCATGTTGTGGCGGATGGTCTGAGCGCATTTCATTTCTTGAACGAGTGGGCCCGCATCACTCGTGGCGAA GGAATCGGCACGGTGCCATTTCTTGATCGGAATGTGCTCCGCGCTGGAGAGCCTTCGGTCAATAGGCAACCTCCCAGGTTCGATCCTGTCGAGTTCCAAC GACCGCCCGTGCTTCTCCCAGATGATACGAATCCAATTGGTGAATTAATTGAAGGAGAATACAAAGAGACAAAATTTTCGATATTAAAGCTCACAAAGGC CAAGCTCAAAATGTTAAAAGACACAGCAGACGAGGGCAATAGTTTGATAACGGCGTCAGAACACCGCCCTTACACCACCTACGAAACCCTAACGGCACAC ACTTGGAGGTGTGCTTGCAAGGCAAGGAAACTAAAACCCGACCAATTGACCACAGTTGGCGTCTGCGTTGACTCGCGCAGACGCACCAACCCGCCGTTGC CAGAGGCCTATTTTGGGAACGCGATCCTCGACGTCAAGGCAATAGGACGTTCGGGGGATATCGTGTCGAAACCGTTGGGGTTTGCTGCGGAGAAAGTAAG GAAAGCAGTTGAGAAAGTGGACCACGAGTATTTAAGCTCGGCCATCGAGTACTTGAAGAAAGAGCCGGATTTAACCAAGTTTCAAGACTTCTACGATGGT GATAAAGGCGACGGTGATGAAGAGCCATGGTTCGGGAATCCAAACCTGGGTGTGACCAGCTGGCTCTGGCTACCGATGCAGGGGCTAGATTTTGGGTTCG GGAAGGAGGTTTACATCGGGACGAGGTATGACTTCGATGGTGACACGACGTTGTCACGAAGTCGAGATGGGGATGGTTCGGTTTTGGTTTCGATTTGCTT GAGGACGGACCATATGGAGGATTTTGAGCACTACTTCTACAACGATATTGTCTAA
AA sequence Show only first row Show all	>Lus10021393 pacid=23179166 polypeptide=Lus10021393 locus=Lus10021393.g ID=Lus10021393.BGIv1.0 annot-version=v1.0 MFIEAVAETTSLDELGESGTGGVASAGAGLMSGCSNNDFQPLIPNVDYTRPISEWPLLLVQLTEFSCGSLSLCFYMSHVVADGLSAFHFLNEWARITRGE GIGTVPFLDRNVLRAGEPSVNRQPPRFDPVEFQRPPVLLPDDTNPIGELIEGEYKETKFSILKLTKAKLKMLKDTADEGNSLITASEHRPYTTYETLTAH TWRCACKARKLKPDQLTTVGVCVDSRRRTNPPLPEAYFGNAILDVKAIGRSGDIVSKPLGFAAEKVRKAVEKVDHEYLSSAIEYLKKEPDLTKFQDFYDG DKGDGDEEPWFGNPNLGVTSWLWLPMQGLDFGFGKEVYIGTRYDFDGDTTLSRSRDGDGSVLVSICLRTDHMEDFEHYFYNDIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021393 [exp]	0	1
AT1G60830			RNA-binding (RRM/RBD/RNP motif...		Lus10011201 [exp]	2.0	0.7861
					Lus10021381 [exp]	3.2	0.8593
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10020511 [exp]	4.2	0.8478
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029952 [exp]	4.5	0.8608
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Lus10015608 [exp]	10.0	0.7697
AT5G62440			Protein of unknown function (D...		Lus10022837 [exp]	13.2	0.7573
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026179 [exp]	14.0	0.7541
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	18.1	0.7160
					Lus10000984 [exp]	19.2	0.7160
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10042872 [exp]	19.8	0.5866

Compare expression of checked genes

Lus10021393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.