Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19070 445 / 4e-154 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G48930 274 / 1e-87 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 232 / 3e-71 HXXXD-type acyl-transferase family protein (.1) AT5G41040 191 / 8e-56 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 177 / 2e-50 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 173 / 4e-49 HXXXD-type acyl-transferase family protein (.1) AT5G42830 153 / 2e-41 HXXXD-type acyl-transferase family protein (.1) AT5G23940 151 / 2e-40 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT1G03390 147 / 5e-39 HXXXD-type acyl-transferase family protein (.1) AT5G07080 130 / 6e-33 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005358 [exp] 825 / 0 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10005360 [exp] 527 / 0 AT2G19070 424 / 9e-146 spermidine hydroxycinnamoyl transferase (.1) Lus10001282 [exp] 525 / 0 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10021393 [exp] 440 / 6e-153 AT2G19070 327 / 5e-109 spermidine hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 286 / 6e-92 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 267 / 1e-84 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 263 / 3e-83 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10037266 [exp] 257 / 9e-81 AT5G48930 365 / 4e-123 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10002321 [exp] 251 / 2e-78 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G109900 [exp] 489 / 4e-171 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.006G165200 [exp] 474 / 1e-165 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 290 / 1e-93 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 290 / 2e-93 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 288 / 1e-92 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 285 / 2e-91 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 283 / 8e-91 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 280 / 1e-89 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.014G166600 [exp] 207 / 6e-62 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 189 / 6e-55 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10021394 pacid=23179168 polypeptide=Lus10021394 locus=Lus10021394.g ID=Lus10021394.BGIv1.0 annot-version=v1.0 ATGGCTACTACTACTTCTATGATCACTTCAAAAAGCTCCACTTATGTGAAACCGGCCGAACTGACACGGTCCGACCGGATGCCACTTTCGGAGTGGGACA TGGTCGGCGCGATAACCCATGTGCCCACTGTCTACTTCTACAGGGCCCCACATTTTGGTGTTTGGGTTCAGGACGACGATGCAGTTTTGAACCAGCTTAG GGATTCGTTGTCCCAGACGCTAGTCCATTTTTATCCGCTGGCTGGCCGGCTCGAACCGGTTGGAGATGGCCGGTTCGAGCTGGATTGTAACGCCATGGGT GTTGAGTTTGTCGTGGCGGAAGCTGAGAGGATGTCGCTTGATGACTTGGGCGACGACCTATCGAGCCCCGCAGTCGACCTGCAACAGTTGATCGGGGAGG TGGACTACAGGCTCCCGATAAACGAGTGGCCGTTGTTGGTTGTTCAGCTTACCAAGTTTAGGTGCGGAGGGATTAGCCTCGGGTTCAACATTTCTCATGC TGTCGTGGATGGGCTGAGTGCTCTTCATTTCTTCAACGAGTGGGCCCGGGTGGCTCGTGGCGAGCTGATCGGTACGGTGCCGTTTCTTGACCGGAAGGTT CTCCGAGCTGGTGAACCTCCGCTTACTAAGCATCCGAGATTTGATCCTGCCGAGTTCGAACGGCCGCCCGTGCTTCTTCGCGATGCCGGTTCGTCCAATA ACAAAGGTCATGGAGCAACCCACCCGACCAAAGTGGAGAAACTGAAACTAACAAAGACCAAAGTGCAAATGTTAAAGGACATGGCCAACGAGAGCAAGAG CCTGACCTTTAAACGTCCATACACAACGTACGAAACCCTAACGGCTCACGTATGGAAGTGTGCATGCAAAGCGCGAAAACTCAAGCCCGACCAGCAAACA GCAGTAGGCATCTGCGTGGACTCACGCAAACGCCTAAACACTCCACTTCCGGACGCGTACTTTGGGAACGCAGTACTGGACGTAAAGGCTATGGCCTACG CCGGTGACCTTATAACAAGGTCACTAGGGTACGCAGCCCAGAAGATAAGGAAGGCGGTAGAGAAGGTCGATAGTGAATTTTTGAGCTCGGCCATCGATTA CTTGAAGAACCAACCAGACTTGACCGAGTTCCAAGACTTCCATGAGGATGGCGCTGGTGATGATGGTCCGTTCTTCGGGATGCCGAACTTGGGAGTGATT AACTGGCTGAGGCTGCCACTTCTAGGGTTGGATTTCGGGTTCGGGAAGGAGGTTTACATGGGTTCGACCCACGAGTTCGACGGGGACACGATGTTGATCC AAAGTCAAGATGGAGATGGCTCGATAGTGCTTGCGATTTGCTTGAGGGCTGACCATATGGATTCTTTCAAACGATGCTTTTACGATGATATGATGTAG
AA sequence Show only first row Show all	>Lus10021394 pacid=23179168 polypeptide=Lus10021394 locus=Lus10021394.g ID=Lus10021394.BGIv1.0 annot-version=v1.0 MATTTSMITSKSSTYVKPAELTRSDRMPLSEWDMVGAITHVPTVYFYRAPHFGVWVQDDDAVLNQLRDSLSQTLVHFYPLAGRLEPVGDGRFELDCNAMG VEFVVAEAERMSLDDLGDDLSSPAVDLQQLIGEVDYRLPINEWPLLVVQLTKFRCGGISLGFNISHAVVDGLSALHFFNEWARVARGELIGTVPFLDRKV LRAGEPPLTKHPRFDPAEFERPPVLLRDAGSSNNKGHGATHPTKVEKLKLTKTKVQMLKDMANESKSLTFKRPYTTYETLTAHVWKCACKARKLKPDQQT AVGICVDSRKRLNTPLPDAYFGNAVLDVKAMAYAGDLITRSLGYAAQKIRKAVEKVDSEFLSSAIDYLKNQPDLTEFQDFHEDGAGDDGPFFGMPNLGVI NWLRLPLLGLDFGFGKEVYMGSTHEFDGDTMLIQSQDGDGSIVLAICLRADHMDSFKRCFYDDMM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021394 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038200 [exp]	1.4	0.9887
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10010545 [exp]	3.2	0.9829
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10017012 [exp]	3.2	0.9751
AT1G14550			Peroxidase superfamily protein...		Lus10024208 [exp]	3.5	0.9811
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	7.9	0.9704
AT5G04660		CYP77A4	"cytochrome P450, family 77, s...		Lus10034156 [exp]	13.5	0.9232
AT5G39130			RmlC-like cupins superfamily p...		Lus10000622 [exp]	14.5	0.9587
AT5G43440			2-oxoglutarate (2OG) and Fe(II...		Lus10022192 [exp]	16.2	0.9755
AT1G17860			Kunitz family trypsin and prot...		Lus10013732 [exp]	16.5	0.9629
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10004907 [exp]	17.5	0.9691

Compare expression of checked genes

Lus10021394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.