Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48930 199 / 4e-59 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 164 / 2e-45 HXXXD-type acyl-transferase family protein (.1) AT5G41040 154 / 5e-42 HXXXD-type acyl-transferase family protein (.1.2) AT2G19070 137 / 1e-35 SHT spermidine hydroxycinnamoyl transferase (.1) AT3G48720 130 / 2e-33 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 129 / 7e-33 HXXXD-type acyl-transferase family protein (.1) AT1G27620 124 / 6e-31 HXXXD-type acyl-transferase family protein (.1) AT1G78990 112 / 8e-27 HXXXD-type acyl-transferase family protein (.1) AT5G16410 103 / 1e-23 HXXXD-type acyl-transferase family protein (.1) AT1G32910 100 / 1e-22 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026123 [exp] 208 / 3e-62 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 195 / 3e-57 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 193 / 1e-56 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10002321 [exp] 176 / 3e-50 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10001282 [exp] 166 / 6e-46 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 160 / 6e-44 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10037266 [exp] 158 / 2e-43 AT5G48930 365 / 4e-123 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10021394 [exp] 157 / 5e-43 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10005360 [exp] 157 / 5e-43 AT2G19070 424 / 9e-146 spermidine hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104700 [exp] 209 / 2e-62 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 198 / 2e-58 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 188 / 1e-54 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 178 / 4e-51 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 174 / 2e-49 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 173 / 5e-49 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G165200 [exp] 165 / 7e-46 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.001G326300 [exp] 160 / 3e-44 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 139 / 1e-36 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 139 / 1e-36 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10021395 pacid=23179226 polypeptide=Lus10021395 locus=Lus10021395.g ID=Lus10021395.BGIv1.0 annot-version=v1.0 ATGAAGGTGAAAATAGAGACGGCATCCATTGCCAAGCCAACCTACGAAGGCAAACACCCTCCTACTCCGACGACCCACATCCCACTTTCCGTCTTCGACA AAGTAACCTACGACACACACATCGCTGTCATCTACGCCTACCGCCCTCCGACCCCTCCGAACGACAAGATCAAGCTCGGCTTGCAGAGGGCTCTGGCAGA ATACAGAGAGTGGGCCGGAAGGCTAGGGCAGGATTCGGATGGAAATTCCGTAATTCTCCTCAATGATGAGGGCGTTAAGTTCGTGGAAGCCACGTGTACT AGCCAGCTGGACCAGGTCATGCCCTTGAAGCCGTCTCCGAATGTGTTGAGCCTACACCCTAGCTTGAAGGGCGTGAAGGAGCTAGTCCAGGTCCAGCTCA CGAGGTTCGCATGTGGGTCCCTTGTGGTTGGGTTCACAGCTCATCATCTTGTCGCTGATGGCCATTCCACTAGCAACTTTCTTGTTGCATGGGGAATGGC CACCCGTGGACTTGATGTGGGTCCCCTGCCACTTCATGATCGTACCATCTTTATTTCTCGAAATCCACCTAGTTTTGAGTACAAACATGAGGGTGTGGAG TATAAGTACATGAATCATGGTCGACCCAACGAGATATATCGTTGGAGCGACAATGACCACGATTCATCTATTGTGGACGATATTATCGTTCACAAAGTCC ACTTTACATTGGACTTTCTGACCAAGCTGAAGTCAAAATCATGCAACTCTACCTCCAACAACAAGCCTTATAGCACGTTCATGTCGTTGCTCGCTCACCT ATGGAGAGCGGTCACGAAAGCTCGAAACCTAGGCGGGTTCGAGTCGACCAGCATTCGAATATCGGTCAACGGCCGAATGAGGATGTCCCCACGAGTCCCC AACGAGTACTTCGGGAACTTGGTCCTCTGGGCTTTCCCAACAACTCGAGTTAAAGACCTACTAAGAGAGCCCTTACCCTACGCTGCCAAGCTGATAAATG ATGCGGTCGCAAAAGTAAATGACGACTATTTCAAGTCGTTCGTTGACTTTGCGACTCACAAGGTCAAAGATGGATTGGTCCCAACCGCGGACATAAACAA ATCCGTGTTGTGCCCGGACTTGGAGGTGGACAGCTGGCTGAGGTTCCCCTTCTACGACCTCGATTTCGGCGGTGGGTCACCTTATGTGTTCATGCCGTCG TACTTCCCGACGGAAGGGATGATGTTCTTGTTGCCGTCGTTCATCGGCGACGGGAGCATTGATGCATTTGTGCCGCTTTTTAAGGACGATTTGGATACTT TTAAGCAGGTTTGCTACTTGCTAGATTAG
AA sequence Show only first row Show all	>Lus10021395 pacid=23179226 polypeptide=Lus10021395 locus=Lus10021395.g ID=Lus10021395.BGIv1.0 annot-version=v1.0 MKVKIETASIAKPTYEGKHPPTPTTHIPLSVFDKVTYDTHIAVIYAYRPPTPPNDKIKLGLQRALAEYREWAGRLGQDSDGNSVILLNDEGVKFVEATCT SQLDQVMPLKPSPNVLSLHPSLKGVKELVQVQLTRFACGSLVVGFTAHHLVADGHSTSNFLVAWGMATRGLDVGPLPLHDRTIFISRNPPSFEYKHEGVE YKYMNHGRPNEIYRWSDNDHDSSIVDDIIVHKVHFTLDFLTKLKSKSCNSTSNNKPYSTFMSLLAHLWRAVTKARNLGGFESTSIRISVNGRMRMSPRVP NEYFGNLVLWAFPTTRVKDLLREPLPYAAKLINDAVAKVNDDYFKSFVDFATHKVKDGLVPTADINKSVLCPDLEVDSWLRFPFYDLDFGGGSPYVFMPS YFPTEGMMFLLPSFIGDGSIDAFVPLFKDDLDTFKQVCYLLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10021395 [exp]	0	1
AT5G50200		WR3, ATNRT3.1, ...	WOUND-RESPONSIVE 3, NITRATE TR...		Lus10041950 [exp]	1.0	0.9049
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	11.7	0.8991
AT4G26010			Peroxidase superfamily protein...		Lus10005679 [exp]	13.4	0.8596
AT4G30170			Peroxidase family protein (.1)		Lus10001442 [exp]	14.9	0.9000
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Lus10009663 [exp]	16.7	0.8881
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040733 [exp]	16.9	0.8718
AT3G01190			Peroxidase superfamily protein...		Lus10018374 [exp]	21.0	0.8882
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	24.7	0.8892
AT5G60700			glycosyltransferase family pro...		Lus10041317 [exp]	25.6	0.8898
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	25.7	0.8930

Compare expression of checked genes

Lus10021395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.