Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36660 330 / 5e-106 PAB7 poly(A) binding protein 7 (.1) AT1G49760 295 / 7e-92 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G71770 293 / 8e-91 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G22760 292 / 1e-90 PAB3 poly(A) binding protein 3 (.1) AT4G34110 289 / 6e-90 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT3G16380 278 / 2e-86 PAB6 poly(A) binding protein 6 (.1) AT2G23350 277 / 4e-85 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G34140 234 / 2e-71 PAB1 poly(A) binding protein 1 (.1) AT5G54900 89 / 5e-19 ATRBP45A RNA-binding protein 45A (.1) AT3G19130 87 / 6e-18 ATRBP47B RNA-binding protein 47B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014392 [exp] 357 / 1e-115 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 355 / 5e-115 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10027733 [exp] 340 / 8e-109 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10035556 [exp] 333 / 4e-102 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10002835 [exp] 288 / 2e-89 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 288 / 4e-89 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 279 / 9e-86 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 276 / 1e-84 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10005357 [exp] 125 / 3e-34 AT2G36660 42 / 2e-05 poly(A) binding protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G191500 [exp] 312 / 2e-99 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.005G198500 [exp] 303 / 4e-95 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.002G062700 [exp] 297 / 7e-93 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.001G304000 [exp] 289 / 1e-89 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.014G025400 [exp] 283 / 2e-87 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.009G099300 [exp] 278 / 1e-85 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G124200 [exp] 278 / 1e-85 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.006G279600 [exp] 93 / 3e-20 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.006G139300 [exp] 92 / 7e-20 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.018G002300 [exp] 92 / 8e-20 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] PF00658 [flax] [poplar] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Lus10021396 pacid=23179165 polypeptide=Lus10021396 locus=Lus10021396.g ID=Lus10021396.BGIv1.0 annot-version=v1.0 ATGGCGGCGGTGGCGGCAGTGGAGAATGCTCAGGCGCCGTTGGTGTACGCTCTGTACGTCGGCGACGTTGACCCCACGGTCGTCGAGTCGCAGATAGTTG AGATATATTCCCGATTCCCCGGCTTCACGTCGGCTTCCCTTTGCCGGAATGATTCTCCTCTTACCGGAAACCCTCGCCACTATGCTTATGTCAATTTCCT CACTCTCCCTCAAGCTAAGGAAGCCATGGAAGCAACTAATCACAGAGTTATAAACGGGAAGGCAATTAGAGTGATGGAATCCAAATCCAATTGGGACTCG CACAACAGCGGCATTGGAAATATTTTCGTGAAAAACCTACAAGATTCGATTGACAATGCAAAGCTTGAAGAGATATTTTCAAAGTATGGGAAAATCATGT CCTGCAAAGTTATGGTGACTGAAGAAGGTACTAGCAAAGGCTATGGATTCGTTCAATTTGAGTCGCCGGAATCCGCTCTCCGGGCAATCGAATCGGCCCA CGACACCATGGTCGACGGCAAGAAATTACATGTAAGTAGATTCGAGAAGAAGGAAGAGAGATTCAAAGCAAACTCCGAGGAATATCACAATTTGTACTTC AAGAATCTCGACGAAAATGTGACTGAAGAGACATTACGAGTGAAATTCTCCGTATTCGGAGAGATCACAAGTTTTCTCGTCACTAAAGATGACGAAGGGA AGTCGAAAGGGTTCGGTTTCGTCAATTTCGCAGAATCAAAGGCAGCACGTCAAGCTCGGGAGTCCATGGACGGAACTCTAATTGGCACGGCTCAAACGAA GAATGAACGCCAACAGTTCTTGCGCCAACGATCAGAGCATCTAAAGACCAAGAGGTTACATAAGCACAAGAACTGTAACCTTTACGTAAAGAACATAAAC GATGATGTGGACGACTTACAACTAAAAGACCACTTCGCCCAAGCGGGGAGAGTAATAACATCCCGAATTATGCGGACTGAGAAAGGCATCAGCTTAGGTT TCGGATTTGTGTGCTTCTCCGCACCGGAGGAAGCCGCCAAATCGATAGCTATCCTCAACGGAAGTTTGTTTCATGGGAAGCCCCTCTATGTAGCAATTGC ACAAAGCAAAGAAGAAAGGAAGAAAATTCTTCAATCTTTCTACTCAAGCAAAGACCGTCAGTCAACGACGTTGACTCCTCCACCGCTGCCGATGACTTCT CCATTCTCCTTTCCGCCTTCATTCCTCCACTCTCGACCTCCGTTCCCACCGCCATTCCCTTTCGTCCCGGGTTTCCACTTCCCTCCTCCGATGATGCTGC CAAACGACACACTGATGCGATTCCCGGAACAGCGACCCTCCAGTACACCATTTCGAAGACCGAATTTCGCAATCGAGAATGGAAAACGAGAAACAAGGCC TAACCAGCAACAGCAGGAGGCCGAATGGAGGAACGATCTCGCGGCAGCGACTCCGAGACATCGCATGGACATGATCTGGGACCGTCTTTTTCCTCTGGTC CAGAACCTTAAGGGCGATGCAGCGAGCGAAATCACACAGATGCTTATAAGAGACATGGACAACACCGAGATCCTGGTACTGCTCGAATCTCCGGCGTCGT TGGGAGCGGAAATCGACCAAGTGGAGAAAGCTATTAACTTGAGGAGCAAGACAACAAGCAACTAG
AA sequence Show only first row Show all	>Lus10021396 pacid=23179165 polypeptide=Lus10021396 locus=Lus10021396.g ID=Lus10021396.BGIv1.0 annot-version=v1.0 MAAVAAVENAQAPLVYALYVGDVDPTVVESQIVEIYSRFPGFTSASLCRNDSPLTGNPRHYAYVNFLTLPQAKEAMEATNHRVINGKAIRVMESKSNWDS HNSGIGNIFVKNLQDSIDNAKLEEIFSKYGKIMSCKVMVTEEGTSKGYGFVQFESPESALRAIESAHDTMVDGKKLHVSRFEKKEERFKANSEEYHNLYF KNLDENVTEETLRVKFSVFGEITSFLVTKDDEGKSKGFGFVNFAESKAARQARESMDGTLIGTAQTKNERQQFLRQRSEHLKTKRLHKHKNCNLYVKNIN DDVDDLQLKDHFAQAGRVITSRIMRTEKGISLGFGFVCFSAPEEAAKSIAILNGSLFHGKPLYVAIAQSKEERKKILQSFYSSKDRQSTTLTPPPLPMTS PFSFPPSFLHSRPPFPPPFPFVPGFHFPPPMMLPNDTLMRFPEQRPSSTPFRRPNFAIENGKRETRPNQQQQEAEWRNDLAAATPRHRMDMIWDRLFPLV QNLKGDAASEITQMLIRDMDNTEILVLLESPASLGAEIDQVEKAINLRSKTTSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49760		PABP8, PAB8	poly(A) binding protein 8 (.1)...		Lus10021396 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	5.5	1.0000
					Lus10003536 [exp]	7.7	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	9.5	1.0000
					Lus10023589 [exp]	9.5	1.0000
					Lus10011078 [exp]	10.6	1.0000
					Lus10012998 [exp]	11.4	1.0000
					Lus10028667 [exp]	12.5	1.0000
					Lus10011425 [exp]	13.0	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	13.4	1.0000
					Lus10027689 [exp]	15.6	1.0000

Compare expression of checked genes

Lus10021396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.