Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22850 620 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G08210 500 / 1e-174 Eukaryotic aspartyl protease family protein (.1) AT2G36670 497 / 5e-173 Eukaryotic aspartyl protease family protein (.1.2) AT5G36260 291 / 6e-93 Eukaryotic aspartyl protease family protein (.1) AT1G05840 286 / 7e-91 Eukaryotic aspartyl protease family protein (.1) AT3G02740 279 / 2e-88 Eukaryotic aspartyl protease family protein (.1) AT1G65240 263 / 4e-82 Eukaryotic aspartyl protease family protein (.1) AT3G42550 227 / 7e-69 Eukaryotic aspartyl protease family protein (.1) AT5G43100 155 / 8e-41 Eukaryotic aspartyl protease family protein (.1) AT3G25700 152 / 1e-40 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005356 [exp] 844 / 0 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 499 / 1e-173 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027732 [exp] 493 / 1e-171 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 494 / 1e-163 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10036430 [exp] 317 / 4e-103 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041103 [exp] 308 / 2e-99 AT3G02740 548 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 298 / 1e-95 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 298 / 2e-95 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 271 / 7e-85 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G213600 [exp] 677 / 0 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 672 / 0 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 523 / 0 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.006G118800 [exp] 520 / 0 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 290 / 3e-92 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 281 / 4e-89 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 165 / 3e-44 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 151 / 2e-39 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 140 / 1e-35 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.008G115900 [exp] 135 / 2e-34 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10021397 pacid=23179227 polypeptide=Lus10021397 locus=Lus10021397.g ID=Lus10021397.BGIv1.0 annot-version=v1.0 ATGGCGTCGGTTTCTCCGGCGAGCCTCGCCGCCGTCTTACTCGCCATCGCAACCGTCTCCGGAGCCGCCTTCCCCGCCACCTTGCAGCTAGAACGCGGGA TCCCTTTACCCAGCCGTAAAGTTGGTCTCAGTCAGCTAACCGCCAGAGACAGCGTCCGTCACCGCAGAATGTTGCAGTCCTCCTCCGCCGCCGCCGACGG CGTCGTCGATTTCCCCGTCCAAGGAACCTTCAACCCTTTCCTCGTCGGGCTGTATTATACAAGATTGCAATTGGGTTCTCCACCAAAGGATTTCTATGTA CAGATAGACACAGGGAGTGATGTTCTTTGGGTTAGCTGTAACAACTGCAATGGCTGCCCTGTTTCCAGTGGCCTTCAGATTCCATTGAATTTCTTTGATT CCGGGAGCTCATCGACATCCTCGTTGATATCCTGCTCGGATCAACGGTGTGCTTTAGGGATCGAAGCGGCCGATTCGGGCTGCTTGGGACAGACAAACAA CCAATGTGGATATACTTTTCAGTATGGTGATGGGAGTGGCACTTCTGGTTACTATGTTCAAGACATGTTGCATCTTGACACCATTGTTGGAGGGTCTCTC ACTACTAATTCCACTGTCCCCATTGTGTTTGGGTGTAGCATTCTACAGACGGGGGACTTGACCAAGCCGGATAGAGCAGTGGATGGGATATTTGGATTCG GACAGCAAGGGCTTTCGGTTGTCTCGCAGCTTGCTTCACAAGGGGTGACGCCTAGAGTGTTCTCTCATTGTTTGAAGGGTGATGATGGTGGTGGTGGTAT ACTGGTTCTTGGAGAGATCGTGGAGCCGACTATCGTGTACACTCCTCTTGTTCCATCACAGCCACATTATAATGTGAATCTGCAGAGTATATCAGTGGGT GGCCAAAGCTTAGCCATCGATCCATCGGTCTTCTCAACATCAGGCAACAAAGGAACCATAGTCGACTCAGGAACAACCTTGGCGTACCTCGCTGAACCAG CTTACCGACCTTTTCTCAGTGCTATCAACAATGCTGTTTCGCAAAACGTGCGGCCAGTTGTTTCGAAGGGGCAACAGTGCTACTTGATTACCAACAGTGT CAGTGACCTCTTTCCTCAAGTTAGCTTACACTTCTCTGGCGGTGCATCCATGATTCTGACACCTCAGGACTACCTCGTTCAGCAAAATAACATCGGTGGC GCTACAGTATGGTGCATTGGTTTCCAGAAAATGCAGGGTCAAGGAGTTACAATCTTAGGAGATCTTATTCTGAAAGACAAGATCTTTGTCTATGACATTG CGAATCAGCGGATTGGATGGACTAACTATGACTGCTCGATGTCGGTCAACGTTTCGACAGCTGAGAACACCGGCAGGACAGAGTTCGTCAACGCGGGCCA GCTAGGCAATGATGGCTCTCCGAAAAATAGACCGATGCCAGCAGCAGCCATGATTGTCATCGTCGCTTTCTTGCTGCTGCTAGGAAGAACCCCCTCAAAT CTCGTGGCTCCGTGA
AA sequence Show only first row Show all	>Lus10021397 pacid=23179227 polypeptide=Lus10021397 locus=Lus10021397.g ID=Lus10021397.BGIv1.0 annot-version=v1.0 MASVSPASLAAVLLAIATVSGAAFPATLQLERGIPLPSRKVGLSQLTARDSVRHRRMLQSSSAAADGVVDFPVQGTFNPFLVGLYYTRLQLGSPPKDFYV QIDTGSDVLWVSCNNCNGCPVSSGLQIPLNFFDSGSSSTSSLISCSDQRCALGIEAADSGCLGQTNNQCGYTFQYGDGSGTSGYYVQDMLHLDTIVGGSL TTNSTVPIVFGCSILQTGDLTKPDRAVDGIFGFGQQGLSVVSQLASQGVTPRVFSHCLKGDDGGGGILVLGEIVEPTIVYTPLVPSQPHYNVNLQSISVG GQSLAIDPSVFSTSGNKGTIVDSGTTLAYLAEPAYRPFLSAINNAVSQNVRPVVSKGQQCYLITNSVSDLFPQVSLHFSGGASMILTPQDYLVQQNNIGG ATVWCIGFQKMQGQGVTILGDLILKDKIFVYDIANQRIGWTNYDCSMSVNVSTAENTGRTEFVNAGQLGNDGSPKNRPMPAAAMIVIVAFLLLLGRTPSN LVAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22850			Eukaryotic aspartyl protease f...		Lus10021397 [exp]	0	1
AT5G22850			Eukaryotic aspartyl protease f...		Lus10005356 [exp]	1.0	0.8662
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10024801 [exp]	2.4	0.8610
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	4.2	0.8308
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	4.5	0.8509
AT5G55060			unknown protein		Lus10043118 [exp]	5.0	0.8345
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	5.1	0.8640
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10024244 [exp]	5.5	0.7838
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	10.4	0.8101
					Lus10007724 [exp]	10.7	0.7721
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	16.2	0.8014

Compare expression of checked genes

Lus10021397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.