Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08220 303 / 6e-104 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005355 [exp] 459 / 1e-165 AT1G08220 325 / 2e-112 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G002000 [exp] 322 / 1e-111 AT1G08220 282 / 8e-96 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05176 [flax] [poplar] ATP-synt_10 ATP10 protein
Representative CDS sequence Show only first row Show all	>Lus10021398 pacid=23179161 polypeptide=Lus10021398 locus=Lus10021398.g ID=Lus10021398.BGIv1.0 annot-version=v1.0 ATGCAGAGAGTGAATCGATTCCTGCATCTAGCTCGCAGTTCATCCAAAGCTTCACTGCTCTCCCAAGCAGCTGGAGCTCAACGCCGTAGCGTCAGAGACC ATGGAAACCCGACGCAACTCCATCAATTGTCCTCCGTTCGATTCCTCGACTTCTATCAGCTTGGAAACAAAGCAGCTATCGAGAAGGAGCGAGCTAGGAT TACAGATGAGATGAATAGAGGATACTTTGCTGACATGGCGGAGTTCAAGAAACACGGCGGGAAGATAGCTCAGGCGAACAAGATTATAATTCCTGCTACA GCAGCAGTTAAGTTTCCGGATTTCGAAGTGGACTTCTCGAGCGGTAGAACTTTAAAGCTGCCAACTCGATTTGCAGGAAACGTTTCCAGTTCTGATGCAT CCGTTGCTCCAAAGGCTTCGCTGCTGTGTCTTTCTTTTAGAGCAAGCTCTCAGGGTATGATTGACTCTTGGACTGTGCCTTTCCTTGATGCATTTGGTGA TGCCAAGAATATTCAGCTCTATGAGGTGTCATTCATAGACTCGTGGCTATTATGTCGAAGTCCAATCAAGAGACTGCTGCTTCGAACAATGAAGAAATCG AAAGTCAACACGAACCAAGAACTTCAAAAGCAGGTTGCTTACTCCTTCGGTGACCACTATGACTTCAGAAAAGAGCTTAAAATACTGAACCTCCTTACAG GGTACATTTACCTACTCGACAAATTCGGTAAAATAAGATGGCAAGGATTCGGCTTGGCCACTCCGGAAGAGATGTCCTCCCTCCTTTCCTGCACTTCCTT GCTCTTAGAAGATTAA
AA sequence Show only first row Show all	>Lus10021398 pacid=23179161 polypeptide=Lus10021398 locus=Lus10021398.g ID=Lus10021398.BGIv1.0 annot-version=v1.0 MQRVNRFLHLARSSSKASLLSQAAGAQRRSVRDHGNPTQLHQLSSVRFLDFYQLGNKAAIEKERARITDEMNRGYFADMAEFKKHGGKIAQANKIIIPAT AAVKFPDFEVDFSSGRTLKLPTRFAGNVSSSDASVAPKASLLCLSFRASSQGMIDSWTVPFLDAFGDAKNIQLYEVSFIDSWLLCRSPIKRLLLRTMKKS KVNTNQELQKQVAYSFGDHYDFRKELKILNLLTGYIYLLDKFGKIRWQGFGLATPEEMSSLLSCTSLLLED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08220			unknown protein		Lus10021398 [exp]	0	1
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10038824 [exp]	2.8	0.8591
AT4G00290			Mechanosensitive ion channel p...		Lus10018822 [exp]	10.9	0.8200
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	15.2	0.8577
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10037076 [exp]	15.6	0.8445
AT1G66590		ATCOX19-1	A. THALIANA CYTOCHROME C OXIDA...		Lus10025812 [exp]	20.0	0.7824
AT1G03687			DTW domain-containing protein ...		Lus10039823 [exp]	21.0	0.8094
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10025393 [exp]	23.4	0.8394
AT3G28760			unknown protein		Lus10005250 [exp]	26.7	0.8171
AT5G36260			Eukaryotic aspartyl protease f...		Lus10027001 [exp]	27.9	0.7924
					Lus10005391 [exp]	36.5	0.8083

Compare expression of checked genes

Lus10021398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.