Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48670 84 / 1e-19 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT5G26630 74 / 2e-16 MADS MADS-box transcription factor family protein (.1) AT1G65300 71 / 5e-15 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT5G27810 68 / 5e-15 MADS MADS-box transcription factor family protein (.1) AT3G05860 69 / 8e-15 MADS MADS-box transcription factor family protein (.1.2.3) AT2G40210 66 / 5e-13 MADS AGL48 AGAMOUS-like 48 (.1) AT2G28700 66 / 5e-13 MADS AGL46 AGAMOUS-like 46 (.1) AT5G26650 65 / 1e-12 MADS AGL36 AGAMOUS-like 36 (.1) AT5G06500 64 / 1e-12 MADS AGL96 AGAMOUS-like 96 (.1) AT5G27960 63 / 4e-12 MADS AGL90 AGAMOUS-like 90 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004150 [exp] 115 / 2e-31 AT1G65330 84 / 8e-19 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) Lus10016180 [exp] 102 / 4e-27 AT5G26650 84 / 5e-19 AGAMOUS-like 36 (.1) Lus10029367 [exp] 97 / 7e-25 AT5G06500 88 / 1e-20 AGAMOUS-like 96 (.1) Lus10012154 [exp] 89 / 2e-22 AT5G06500 65 / 7e-13 AGAMOUS-like 96 (.1) Lus10007592 [exp] 84 / 2e-20 AT5G26650 66 / 8e-13 AGAMOUS-like 36 (.1) Lus10022316 [exp] 76 / 7e-17 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10014578 [exp] 72 / 2e-15 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10032108 [exp] 71 / 6e-15 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1) Lus10022325 [exp] 64 / 2e-12 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201700 [exp] 129 / 1e-35 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 120 / 2e-34 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.005G002400 [exp] 100 / 9e-26 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 86 / 5e-21 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.013G001700 [exp] 76 / 6e-17 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.013G107600 [exp] 62 / 1e-12 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.001G329800 [exp] 52 / 3e-08 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1) Potri.001G328600 [exp] 49 / 2e-07 AT5G60910 136 / 1e-39 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.007G115200 [exp] 48 / 7e-07 AT2G22540 189 / 3e-60 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G155300 [exp] 45 / 5e-06 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10021399 pacid=23179172 polypeptide=Lus10021399 locus=Lus10021399.g ID=Lus10021399.BGIv1.0 annot-version=v1.0 ATGAGGAAGAAAGTGAAGCTTGCTTTCATGGAGAACAGGTCTGCTAGGCTACATTGCTTGAAGAACCGCCGACGCAATTTTATGAAGAAGGTCGAGGAGC TTTCGGTCCTCTGTGGGGTCGAAGCTTTCGCAGTTGTCTACAGTCCCGACGAGCCAGGGTTTGCGGTTTGGCCCCGCAACGAAGCGGAGGCTCAGCAGGT GCTGCTGAAGTACCAGACCATACCCGAGGATGCCCACCAGGCCGATAACAAGCTGGACCAGGAGAAGTACTTGGAAGGCCTCATCAGCAAGCTACAAGCG AAGCAGAGAGTCCAACTGAAACGAACGGACGAGCTCGAGTTTGCTTATCTCATGGATGAAGTTCACTTCGGGAAAGGGCTGGATGGGATGGACCTCCATG AAGTGAATTCCTTGTCCTTGCTGATCAAGGACAGGCTCAGGAACCTAAGGGAAAGGGCTAAGAAGTTGGAAATCACTACCAAGAATGGAGTAGCCATTGA TGCCCTGTTATATGAGAATAAGTAA
AA sequence Show only first row Show all	>Lus10021399 pacid=23179172 polypeptide=Lus10021399 locus=Lus10021399.g ID=Lus10021399.BGIv1.0 annot-version=v1.0 MRKKVKLAFMENRSARLHCLKNRRRNFMKKVEELSVLCGVEAFAVVYSPDEPGFAVWPRNEAEAQQVLLKYQTIPEDAHQADNKLDQEKYLEGLISKLQA KQRVQLKRTDELEFAYLMDEVHFGKGLDGMDLHEVNSLSLLIKDRLRNLRERAKKLEITTKNGVAIDALLYENK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10021399 [exp]	0	1
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10028361 [exp]	5.0	0.8223
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10011826 [exp]	18.5	0.7886
AT1G13610			alpha/beta-Hydrolases superfam...		Lus10019205 [exp]	19.7	0.7881
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041811 [exp]	24.2	0.8096
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10035890 [exp]	34.4	0.7499
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Lus10011396 [exp]	38.3	0.7182
AT4G31680	B3	REM8	Transcriptional factor B3 fami...		Lus10010080 [exp]	85.0	0.7205
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021050 [exp]	100.8	0.6965
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10011875 [exp]	112.0	0.6994
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	116.2	0.7138

Compare expression of checked genes

Lus10021399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.