Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22860 548 / 0 Serine carboxypeptidase S28 family protein (.1.2) AT2G24280 412 / 1e-139 alpha/beta-Hydrolases superfamily protein (.1) AT5G65760 392 / 7e-132 Serine carboxypeptidase S28 family protein (.1) AT3G28680 162 / 6e-47 Serine carboxypeptidase S28 family protein (.1) AT2G18080 110 / 6e-26 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1) AT4G36190 108 / 3e-25 Serine carboxypeptidase S28 family protein (.1) AT4G36195 106 / 2e-24 Serine carboxypeptidase S28 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005354 [exp] 946 / 0 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10008358 [exp] 518 / 0 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10005353 [exp] 487 / 3e-169 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10011603 [exp] 414 / 2e-140 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10021325 [exp] 367 / 9e-122 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10017002 [exp] 313 / 2e-102 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10039645 [exp] 182 / 2e-52 AT5G65760 374 / 7e-127 Serine carboxypeptidase S28 family protein (.1) Lus10028365 [exp] 89 / 2e-18 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 53 / 3e-07 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G213500 [exp] 652 / 0 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 652 / 0 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.010G232300 [exp] 564 / 0 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.018G018500 [exp] 560 / 0 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002200 [exp] 558 / 0 AT5G22860 534 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 535 / 0 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213400 [exp] 531 / 0 AT5G22860 514 / 8e-180 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213200 [exp] 530 / 0 AT5G22860 518 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 502 / 2e-175 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213000 [exp] 411 / 9e-141 AT5G22860 371 / 6e-126 Serine carboxypeptidase S28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05577 [flax] [poplar] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Lus10021400 pacid=23179157 polypeptide=Lus10021400 locus=Lus10021400.g ID=Lus10021400.BGIv1.0 annot-version=v1.0 ATGGAACCAAAATCACTACTACCACTCCTATCCATATCACTACTTATTTTCCTAACATCCCTAACAACCCAATTCTTCCTGACACAGTCAGAATTCTCCA AACTTGGTGTCCAAAGAAGAACCCCAAGTACTAGAAAAACTAGTTATAATGACAAGTTTGGTGATCAATCCGTGGAGGATTCGGATTTGGATTCGGATTA TGTCGCCTATTACTACAACCAGACTCTTGACCACTTCAACTACAAGCCTGAGAGCTACATGACCACTTTCAAGCAGAGGTATGTTGTGAACACCAAGTAT TGGGGTGGTGCCGATACCCATGCTCCGATTTTCGTCTACTTTGGACACGAGGGCGCTATCGATTCTGCGTGGACTTACATCGGGTTCCTTACTGAGAATG CTCCTCGGTTCAAGGCTCTCATCTTATATATCGAGCACCGGTACTACGGTGAGTCGATCCCATTCGGGTCGTGGGAGGAAGCATCGGCAAATGCTAGCTC ACTTGGATACTTAAACTCAGCTCAGGCGATCGCAGATTACGCCGCCATCATCCTCCACGTCAAGCAAAAATATTTGGCTCGAAACTCGCCGGTGATAGTC ATCGGAGGATCCTACAGTGGAATGTTGGCGGCCTGGTTCCGGCTCAAGTACCCTCACATCGCAGTCGGGGCATTGGCTTCGTCGGCTCCAATACTCTACT TCGATGGCGGAGTTGCACCCGAGGACGGATACTACTCTATCGTAACAAAGGATTTCAAAGAAGCTAGTACGAGCTGCTACGAGACAATCAGCAAGTCGTG GGTTGAAATTGAAAGAGTGGCTTCCCAACCTAATGGCCTTTCATTCCTCAGCAAGAAATTCAAGACTTGCCGTCCTTTACGAAGGAGCTTCGATCTGAAG GATTACTTGGACTCGATTTATGCGGACGCTGCTCAGTACAACGAGCCGCCTGAATATCCGGTCGAAATCGTCTGTCGTGCCATCGACGGTGCCGATAAAG GCGATGTTTTGGGACAGATACTCGCCGGCGTCGTTGCTTACATGGGGAATGATTCATGTTACGATGTCTTGGACTTTAGCCCTCCATCCGCTTCATCTCT TGCTTGGAGATGGCAGGTGTGTAGCGAGTTAGTGTTCCGGATAGGGCACGATAGCAACACGATGTTTCCGCCGGAGCCGTTCAGTCTCAACAGCTTTATC AAAAAATGCAACACCACTTTTGGTGTTCTCCCTCAGCCTCACTGGGTCACCACCTTCTACGGAGGGCATGAATTGAAACTAGCTCTACATAGATTTGCTA GCAACATCATCTTCTCAAATGGGTTAAAAGATCCTTACAGCAGTGGCGGGGTATTGGAGAACATATCAGATAGCATTATTGCTTTGTCGACGACTCATGG ATCTCATTGCTTGGATATACAAACATCAAGACCAAGTGATCCGGATTGGTTAATCAAGCAGAGGAAAACCGAGTTGGAGATTATTGGCCGGTGGCTTTCC AAGTACTACACAGATCTTGTTCAGCTGAAATGA
AA sequence Show only first row Show all	>Lus10021400 pacid=23179157 polypeptide=Lus10021400 locus=Lus10021400.g ID=Lus10021400.BGIv1.0 annot-version=v1.0 MEPKSLLPLLSISLLIFLTSLTTQFFLTQSEFSKLGVQRRTPSTRKTSYNDKFGDQSVEDSDLDSDYVAYYYNQTLDHFNYKPESYMTTFKQRYVVNTKY WGGADTHAPIFVYFGHEGAIDSAWTYIGFLTENAPRFKALILYIEHRYYGESIPFGSWEEASANASSLGYLNSAQAIADYAAIILHVKQKYLARNSPVIV IGGSYSGMLAAWFRLKYPHIAVGALASSAPILYFDGGVAPEDGYYSIVTKDFKEASTSCYETISKSWVEIERVASQPNGLSFLSKKFKTCRPLRRSFDLK DYLDSIYADAAQYNEPPEYPVEIVCRAIDGADKGDVLGQILAGVVAYMGNDSCYDVLDFSPPSASSLAWRWQVCSELVFRIGHDSNTMFPPEPFSLNSFI KKCNTTFGVLPQPHWVTTFYGGHELKLALHRFASNIIFSNGLKDPYSSGGVLENISDSIIALSTTHGSHCLDIQTSRPSDPDWLIKQRKTELEIIGRWLS KYYTDLVQLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10021400 [exp]	0	1
AT5G47550			Cystatin/monellin superfamily ...		Lus10034773 [exp]	12.4	0.6212
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10037859 [exp]	15.0	0.6274
AT1G34580			Major facilitator superfamily ...		Lus10020934 [exp]	23.9	0.5934
AT2G39855			unknown protein		Lus10009870 [exp]	26.8	0.6072
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022934 [exp]	27.7	0.5526
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012510 [exp]	34.3	0.5617
					Lus10005752 [exp]	37.1	0.5690
					Lus10038720 [exp]	40.4	0.5573
AT2G23440			unknown protein		Lus10009345 [exp]	46.6	0.5587
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10043327 [exp]	58.5	0.5133

Compare expression of checked genes

Lus10021400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.