Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08190 1425 / 0 ZIP2, ATVPS41, ATVAM2 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1) AT4G00800 49 / 2e-05 SETH5 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005352 [exp] 1802 / 0 AT1G08190 1437 / 0.0 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G212700 [exp] 1570 / 0 AT1G08190 1477 / 0.0 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1) Potri.009G002400 [exp] 1524 / 0 AT1G08190 1440 / 0.0 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1) Potri.007G098000 [exp] 44 / 0.0003 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS
Representative CDS sequence Show only first row Show all	>Lus10021401 pacid=23179230 polypeptide=Lus10021401 locus=Lus10021401.g ID=Lus10021401.BGIv1.0 annot-version=v1.0 ATGGCTCCAATTCCGCCGGAGAACGGCGTAGACGGCGACGACGAGCGGGAGGAAGAGGAAGACGACGACGAAGATGAAGAAGACGAAGGCGAAGAAGAAG AGGACGAGGAGGAGCCGAGGCTCAAGTACCAGCGAATGGGCGGCAGCATACCGTCTCTGCTCGCCAACGATGCGGCGTCGTGCATCGCGGTGGCGGAGCG CATGATCGCGCTCGGTACGCGCGAAGGAACCGTCCACATACTTGATTTTCTCGGTAATCAGGTTAAGGAATTCCCTGCTCACACTGCTGCAGTGAATGAT CTAAGCTTTGATGTAGAAGGCGAATACATTGGAAGCTGTTCAGATGATGGCTCGGTTATAATAAACAGCCTCTTCACTGATGAAAGAATGAAGTTTGAGT ATCATCGTCCAATGAAGGCAATTGCGATGGATCCAGAATATTCAAGAAAAGCCTCCAAGAGATTTGTTGCTGGTGGCCTGGCTGGTCAGTTGTATTTAAA CTCAAAGAAATGGCTGGGGTACCGTGACCAGGTCTTGCACTCCGGGGAAGGCCCAATACATGCTGTGAAGTGGAGAACAAATCTCATTGCTTGGGCCAAT GACACAGGAGTCAAAGTATATGATGCTGTCAATGATCAGCGCATAACGTTTATTGAACGGCCACGAGGAAGTCCTCGCCCCGAGCTTCTTCTTCCTCATC TTGTTTGGCAGGGTGACACGTTGTTGGTTATTGGTTGGGGAACATCTGTGGAAGTTGTATCGATAAAGGGACACCAGTTCAGGGATTCCAATGGAACATT TGCGAGAACAATGTCAAGTAGGAACCAAGTGGACATTGTTGCATCTTTTCAGACTAGCTATTACATTTCAGGCATTGCTCCATTTGGCGACTCTTTGGTT GTTTTGGCTTATATTCATGGGGAAGACGACAGTGAGAAAGACTTCAGCAGTACCATTCCATCAAGACAGATTAACGCACAAAGGCCTGAAATCCGTGTTG TCACTTGGAATAATGATGAACTTTCAACAGATGCTCTACCTGTCCATGGCTTCGAGCATTACAAAGCAAAAGACTATGCTTTTGCTCATGCTCCTTTCTC AGGAAGCAGTTATGCTGGTGGTCAGTGGGCTTCTGGTGATGAGCCAATGTACTATATTGTTTCCCCAAAGGATGTGGTTATAGCAAAACCAAGGGATGCT GAAGACCATATTTCATGGCTTCTACAACATGGTTACCACGAAAAAGCTTTAGCAGCAGTTGAAGCAGGCCAAGGCCGTAGTGAACTCCTTGATGAGGTGG GAACAAGATATCTTGACCATTTAATTGTGGAGGGGAAGTATGCTGAGGCCGCATCCCTTTGTCCTAAAGTTTTGCGGGGATCTGCTTCGGCATGGGAGAG ATGGGTTTTCCATTTCGCTCATCTCCGTCAGCTCCCTGTACTGGTACCATATATACCAACAGAGAACCCAAAACTGCGTGACACTGCTTACGAGGTTGCT CTTGTAGCATTGGCTACTAATCAATCTTTCCATAAGGATCTGTTGTCAACTGTTAAATCGTGGCCATCTAAAATCTACTCTGCACCAACAGTTATAGCAG CTATAGAACCTCAGATAAATACTTCTTCCATGAGTGACGCACTCAAAGAGGCTCTAGCTGAGTTGTATGTAGTAGATGGGCAATATGAGAAGGCTTTTTC ACTATATGCAGACCTTTTGAAACCTGAATTATTTGATTTCATTGAAAAGCACAACTTACAAGATGTCATCCGCGAAAAGGTTGTCCAGCTAATGATGCTT GACTGTAAGCGTGCTGTTTCTCTATTCATGCAAAACAGGGAAACGATATCTCCATTTGAAGTTGTCTCGCAACTGTTGTCCTCAAAAGCTCAATGTGATT CAAGATATTTCTTGCATTCGTATCTACATGAACTATTCGAAGCTAATCCACACGCTGGGAAGGATTTCCACGATATGCAGGTAGAGCTTTACGCGGATTA TGATCCCAAAATGTTGCTCCCTTTCCTACGCAGCAGCCAACATTACAAACTTGAGAAGGCGTTGGATATTTGTGTCAAAAGAGATCTCTTGAGGGGGCAG GTCTTCATCCTCGGAAGGATGGGGAACGCGAAAAAGGCGTTAGCTGTTATCATCAACAAATTGGGGGATATAGAAGAGGCTGTAGAATTTGTGACCATGC AGCACGATGATGACCTTTGGGAAGAACTGATCAAGCAGTGTCTTAACAAGCCTGAAATGGTTGGAGTGTTGTTGGAGCACACTGTTGGCAATCTAGACCC TTTGTATATCGTAAACATCGTACCCAACGGCCTGGAGATTCCACGGCTTAGGGATCGTCTGGTGAAGATCATCACTGATTACAGAACCGAAACATCCCTC AGACACGGCTGCAACGACATTCTCAAGGCCGATTGCGTGAACCTCTTGGTGAAATACTTCAACGAAGCGAAGAGGGCGATATGCCTGGGAGGTGAGGAAG ACGACTCGAGAACAAAAAGGGACGCTCGTCGAGACTCCCACGCTACGGCAGACAGAATATTGAACATGAGGAACATGGATGTCAAGTCGAAAACAAGAGG GGACGCGAGGTGCTGCATGTGTTTCGACCCTTTCTCGATCCAGAACGTCTCGGTCATTGCCTTCTTCTGCTGCCACGCTTACCACCAGAGCTGTCTCGCG GATTCAATGAACTCCATCGTCAATAAGGGATCAGCTCACGATTCTGATGAGGATGATGACGAGGATGATGATGAGGACCGTTCGAACGGCCCTCGATTGA GATGTATTCTATGCACTACGGCCGCGAGTTGA
AA sequence Show only first row Show all	>Lus10021401 pacid=23179230 polypeptide=Lus10021401 locus=Lus10021401.g ID=Lus10021401.BGIv1.0 annot-version=v1.0 MAPIPPENGVDGDDEREEEEDDDEDEEDEGEEEEDEEEPRLKYQRMGGSIPSLLANDAASCIAVAERMIALGTREGTVHILDFLGNQVKEFPAHTAAVND LSFDVEGEYIGSCSDDGSVIINSLFTDERMKFEYHRPMKAIAMDPEYSRKASKRFVAGGLAGQLYLNSKKWLGYRDQVLHSGEGPIHAVKWRTNLIAWAN DTGVKVYDAVNDQRITFIERPRGSPRPELLLPHLVWQGDTLLVIGWGTSVEVVSIKGHQFRDSNGTFARTMSSRNQVDIVASFQTSYYISGIAPFGDSLV VLAYIHGEDDSEKDFSSTIPSRQINAQRPEIRVVTWNNDELSTDALPVHGFEHYKAKDYAFAHAPFSGSSYAGGQWASGDEPMYYIVSPKDVVIAKPRDA EDHISWLLQHGYHEKALAAVEAGQGRSELLDEVGTRYLDHLIVEGKYAEAASLCPKVLRGSASAWERWVFHFAHLRQLPVLVPYIPTENPKLRDTAYEVA LVALATNQSFHKDLLSTVKSWPSKIYSAPTVIAAIEPQINTSSMSDALKEALAELYVVDGQYEKAFSLYADLLKPELFDFIEKHNLQDVIREKVVQLMML DCKRAVSLFMQNRETISPFEVVSQLLSSKAQCDSRYFLHSYLHELFEANPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYKLEKALDICVKRDLLRGQ VFILGRMGNAKKALAVIINKLGDIEEAVEFVTMQHDDDLWEELIKQCLNKPEMVGVLLEHTVGNLDPLYIVNIVPNGLEIPRLRDRLVKIITDYRTETSL RHGCNDILKADCVNLLVKYFNEAKRAICLGGEEDDSRTKRDARRDSHATADRILNMRNMDVKSKTRGDARCCMCFDPFSIQNVSVIAFFCCHAYHQSCLA DSMNSIVNKGSAHDSDEDDDEDDDEDRSNGPRLRCILCTTAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Lus10021401 [exp]	0	1
AT5G45160			Root hair defective 3 GTP-bind...		Lus10040630 [exp]	1.4	0.8672
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10035737 [exp]	1.4	0.8845
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10005057 [exp]	6.9	0.8527
AT1G67930			Golgi transport complex protei...		Lus10007329 [exp]	18.0	0.8495
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10004040 [exp]	18.5	0.8474
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	18.8	0.8514
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10018902 [exp]	20.6	0.8438
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	21.8	0.8460
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10037321 [exp]	24.0	0.8273
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10029001 [exp]	24.6	0.8350

Compare expression of checked genes

Lus10021401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.