Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26830 1090 / 0 Threonyl-tRNA synthetase (.1) AT2G04842 421 / 1e-138 EMB2761 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) AT1G17960 399 / 1e-132 Threonyl-tRNA synthetase (.1) AT1G18130 192 / 1e-57 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005351 [exp] 1390 / 0 AT5G26830 1088 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030841 [exp] 1155 / 0 AT5G26830 1007 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030645 [exp] 1085 / 0 AT5G26830 946 / 0.0 Threonyl-tRNA synthetase (.1) Lus10012360 [exp] 403 / 2e-131 AT2G04842 1035 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030843 [exp] 275 / 3e-87 AT5G26830 248 / 2e-77 Threonyl-tRNA synthetase (.1) Lus10030644 [exp] 171 / 6e-50 AT1G17960 150 / 3e-44 Threonyl-tRNA synthetase (.1) Lus10030642 [exp] 95 / 3e-23 AT1G17960 79 / 9e-19 Threonyl-tRNA synthetase (.1) Lus10006406 [exp] 77 / 3e-16 AT2G04842 203 / 6e-63 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030584 [exp] 48 / 3e-05 AT3G54630 471 / 7e-161 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145600 [exp] 1189 / 0 AT5G26830 1100 / 0.0 Threonyl-tRNA synthetase (.1) Potri.010G096500 [exp] 880 / 0 AT5G26830 827 / 0.0 Threonyl-tRNA synthetase (.1) Potri.014G162200 [exp] 417 / 1e-136 AT2G04842 1089 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Potri.010G096550 [exp] 236 / 2e-73 AT1G17960 219 / 2e-69 Threonyl-tRNA synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0072 [flax] [poplar] Ubiquitin PF02824 [flax] [poplar] TGS TGS domain CL0094 [flax] [poplar] Peptidase_ME PF07973 [flax] [poplar] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
Representative CDS sequence Show only first row Show all	>Lus10021402 pacid=23179155 polypeptide=Lus10021402 locus=Lus10021402.g ID=Lus10021402.BGIv1.0 annot-version=v1.0 ATGGCTGCTATCGCCGGCGCCGCCGGCGCTCATCCGAAGGACGAAGCGTATCTGAACGCAGTGATTCCGAAACGTATCCAGCTGTTCCAGTCTATCCAGG AGCAGCAGAAGCTCGAGCTGGATTCCCGCTCTCACGATCCCATCAAGATTACTTTGCCGAATGGGACGGTGAAGGAAGGTAAGAGGTGGTCGTCGACCCC TTGGGACATTGCGAAGGAGATCTCCAAGAGCTTGGCGTCCAATGCATTGATATCTCAAGTCAATGGAGTTCTATGGGATATGAAACGGCCGTTGGAAAGT GATTGTGAGCTGAAATTGTTTACCTTCGACGATGATGAAGGGCGTGATACCTTCTGGCACTCCAGCGCTCATATTCTTGGTCAGTCACTGGAACAGACGT ATGGTTGCAAGCTCTGCATTGGACCTTGCACCACCAGAGGGGAGGGATTCTATTATGATGCATTCTACGGAGAACTGGGTTTGAATGAGGATCACTTCAA GAAAATTGAAGCTGGAGCCTCAAAAGCTGCCAAGGAAGCCCAAGACTTTGAGCGTATTGAAGTCACCAAGGAACAGGCCCTTGAGATGTTCTCCGAGAAC AACTTTAAGGTTGAAATCATAAATGATCTGCCTGGGGACAAAACTATTACCGTGTACAGGTGTGGTCCATTGGTTGATCTGTGTCGTGGTCCGCATATCC CAAACACATCTTCTGTAAAAGCACTTGCATGCTTGAAGGCTTCTTCTGCCTATTGGAGGGGGAACAAAGATCGTGAAAGTTTGCAAAGAGTCTATGGCAT ATCATATCCTGACCAGAAACGACTGAAGGAGTATTTGCACAATCTGGAAGAAGCGAAGAAGTATGATCACAGACTATTGGGGACTAAGCAGGAGCTTTTC TTCTGCCATCCTCTAAGCCCTGGAAGTTGGTTCTTCCTTCCTCATGGGACGCGGATATACAACAAACTGCAAGAATTTATAAAATCTGAATATAGAAAGA GGGGTTATGATGAGGTTAAATCCCCAAATATGTACAACATGAAACTCTGGGAGACATCGGGACACGCTGCCAATTACAGGGAAAACATGTTCTTGCTTGA TATCGAAAAGCAAGAATTTGGACTGAAACCGATGAATTGTCCTGGGCATTGTTTGATGTTCCAGCACAGAGTTCGATCTTACCGAGAACTTCCTCTTCGT CTTGCTGATTTCGGTGCTTTGCATCGAAATGAGGCTAGTGGTGCACTCACAGGATTAACTCGCGTTCGAAGGTTTCAACAGGATGATGCACATATCTTCT GCACGGAGAACCAGATAAAAGATGAAGTGAGAGGTGTCTTGGAATTCATTGATTACACATATAAAGTATTTGGATTCACATATGAGCTGAAGCTCTCCAC GAGGCCAGAAAAATATATGGGGGAACTGGAAACATGGAAGAGAGCCGAGGATGCTCTGACTGAAGCGTTGAATGAGTTTGGGAAGCCTTGGCTGATAGAT GAAGGAGATGGTGCTTTTTACGGTCCTAAGATAGATATTAGCGTATCTGATGCTTTGAAAAGGAAATTCCAGTGTGCCACGTTGCAGCTTGATTTCCAAC TTCCAATATGTTTCAAGTTGGAGTACTCGGCAGACGATGAAACCAAGTTAGAAAAACCAGTGATGATACACAGAGCCATTCTGGGATCTGTGGAGCGTAT GTTTGCTATACTGCTGGAACACTATAAGGGGAAGTGGCCTTTCTGGCTAAGCCCTCGTCAAGCAATTGTCTGCCCTGTCTCTGCCAAGTCTATGGACTAT GCTAAACAAGTACGGGACCAGATTCATGCAGCAGGATATTACGTTGATGCCGATGTGACTGACAGAAAGATCCAGAAAAAGATCAGAGAAGCTCAACTAG CACAGTACAACTACATCTTAGTCGTCGGCGAGGAGGAAGCCAATACTGGCCAGGTGAGTGTGCGGAAGAGAGATGAGTCGGAAAAGGCAAAGCACCCGGT GAAGAGCATCGAAGCCTTGCTGCAAGATTTCAAGGATGAAACCGATGCTGCATTTCATTAA
AA sequence Show only first row Show all	>Lus10021402 pacid=23179155 polypeptide=Lus10021402 locus=Lus10021402.g ID=Lus10021402.BGIv1.0 annot-version=v1.0 MAAIAGAAGAHPKDEAYLNAVIPKRIQLFQSIQEQQKLELDSRSHDPIKITLPNGTVKEGKRWSSTPWDIAKEISKSLASNALISQVNGVLWDMKRPLES DCELKLFTFDDDEGRDTFWHSSAHILGQSLEQTYGCKLCIGPCTTRGEGFYYDAFYGELGLNEDHFKKIEAGASKAAKEAQDFERIEVTKEQALEMFSEN NFKVEIINDLPGDKTITVYRCGPLVDLCRGPHIPNTSSVKALACLKASSAYWRGNKDRESLQRVYGISYPDQKRLKEYLHNLEEAKKYDHRLLGTKQELF FCHPLSPGSWFFLPHGTRIYNKLQEFIKSEYRKRGYDEVKSPNMYNMKLWETSGHAANYRENMFLLDIEKQEFGLKPMNCPGHCLMFQHRVRSYRELPLR LADFGALHRNEASGALTGLTRVRRFQQDDAHIFCTENQIKDEVRGVLEFIDYTYKVFGFTYELKLSTRPEKYMGELETWKRAEDALTEALNEFGKPWLID EGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPICFKLEYSADDETKLEKPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSAKSMDY AKQVRDQIHAAGYYVDADVTDRKIQKKIREAQLAQYNYILVVGEEEANTGQVSVRKRDESEKAKHPVKSIEALLQDFKDETDAAFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10021402 [exp]	0	1
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	1.0	0.9603
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008664 [exp]	3.5	0.9508
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	4.2	0.9530
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	5.3	0.9448
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	6.7	0.9477
AT5G49560			Putative methyltransferase fam...		Lus10014309 [exp]	7.1	0.9118
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	7.7	0.9479
AT3G15460			Ribosomal RNA processing Brix ...		Lus10027900 [exp]	7.7	0.9306
AT4G13780			methionine--tRNA ligase, putat...		Lus10016658 [exp]	8.8	0.9450
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031481 [exp]	9.8	0.9413

Compare expression of checked genes

Lus10021402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.