Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27950 280 / 3e-82 Ring/U-Box superfamily protein (.1) AT5G04460 209 / 3e-57 RING/U-box superfamily protein (.1.2.3) AT2G34920 87 / 2e-17 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT1G30860 86 / 4e-17 RING/U-box superfamily protein (.1) AT5G19080 49 / 7e-06 RING/U-box superfamily protein (.1) AT1G63900 49 / 7e-06 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT3G06140 49 / 1e-05 RING/U-box superfamily protein (.1) AT2G38195 48 / 2e-05 RING/U-box superfamily protein (.1.2) AT1G59560 48 / 2e-05 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT2G38220 48 / 2e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016162 [exp] 519 / 2e-178 AT2G27950 278 / 6e-85 Ring/U-Box superfamily protein (.1) Lus10037928 [exp] 432 / 2e-139 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10038656 [exp] 246 / 4e-70 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 221 / 1e-61 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10017455 [exp] 220 / 5e-61 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10038389 [exp] 53 / 6e-07 AT4G20160 155 / 2e-40 unknown protein Lus10004419 [exp] 52 / 1e-06 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10027994 [exp] 52 / 1e-06 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10036249 [exp] 52 / 2e-06 AT4G20160 182 / 3e-48 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G217700 [exp] 681 / 0 AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1) Potri.009G003500 [exp] 661 / 0 AT2G27950 578 / 0.0 Ring/U-Box superfamily protein (.1) Potri.008G030100 [exp] 432 / 2e-139 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.010G231100 [exp] 250 / 3e-71 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.003G156400 [exp] 99 / 4e-21 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.001G074800 [exp] 91 / 2e-18 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 51 / 2e-06 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 50 / 3e-06 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.014G138000 [exp] 49 / 6e-06 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.005G036400 [exp] 48 / 2e-05 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021403 pacid=23179239 polypeptide=Lus10021403 locus=Lus10021403.g ID=Lus10021403.BGIv1.0 annot-version=v1.0 ATGGCTGTAGCTGGTCTGCAGATATCTGTGCTTGATTCGTCCTTTCTAAGGGATTCACAGTCAGATGCGGTGAGAAGTCGTGCTGATGATGGAAGGATGA ATGCTCGTGCATCGTCGCTTCTGAGGATGTGGCGGGAGCTTGAAGATGAGCATGGGGTGAGTCATGGCCAGGGAAGGGTTAGTGAGAGGTTGCACCGGGG TGAGGTCTTGAGCAACAACAATGGTGGTTCGGAGGATGTGAGTGGAGGTGAGAGCGAGTACGGACAGTGGTCACCGCGCCCTACTGAATCCGAGAATGGA CAGGAGGATGCTGCATCGTCCGATCTTGGGGAGATGGAGAGGGAAAGAGTGAGGCAGATTTTCCGGGAGTGGATGAGTAGTGGCGCTGGGGGAAAGACGC CGCGAAGAAATGGTTCTAGAGCAGAATGGCTTGGTGAAACCGAACAGGAGAGAGTGAGGATCATAAGGGAGTGGGTGCAGAGGAATACTCGGCAAAGAGG AGGTGCTCACTTCGAACGTGGTGATAATGACCATGGTCCTGCTGCTGGCCAGATCGAGCAAGTTCTCGATAGTCTCAACCTTCGTCGTAACGAAGGCCAG GCGGAGCATGCACGAAGAGGGATTCGTCGAGTCTGTGGCAGACAGGCTCTTCTTGACATGCTTAAGAAGGCTGAGCGAGAACGCCAAAGAGAGCTCCAAG GGTTGCTGGAGCATCGGGCTGTTACTGGATTTGCTCATCGTCACAGGATTCAGTCATTGCTGAGAGGCAGGTTCCTGCGAAATAACAGAATGATTGAAAC TGAGAGGCCTAGATCAACAGCCGCTCGTGAGCTAGGTTTGCTGAGGCAAAGAAATGCTGTAGCTGATCTGAGGGAAGGGCTATTCTCCAGAGTTGACCAT TCAGTTTCTGGTCAACAAGGCACCAATGCTTCTGATACCTCATCTAACATTGACCTAAATGGCGACAGAATGGAGCAATCTGAAGCAGATGATGCACAGA TGGTTTTGAATGAATCTCCTGATCAAATAGAGGAAAACAATAGTTATAGGATCCAAGATGATGATAGAAATGATATGCCGGCTACTACTAATGAAGATGC TTTGTCGGTGGAAGAATCTGTTGATCGGTTAGAGTACGATATTTCTGGGCAGGCTGCTCAGAATATCGGTGCCAGCGAACTTGAGCGATCATCAACCTTC GATTTCGACGAAAGGACTGGTGATAATAATGCAGCACCCGAGTTAACTGGGGAAGCCAATGAAGAATCTGAAGACCTGATTTCGGAAAGTGAAAGCAGAG GCATGCACGAAACTGCTGCCGAGTCTGTAGAATGGCGAGACGAACATCAACACGATGAAACCACCGCGGCTGATGACGAATGGTACGAAAACCACGACAC AGCAGAGGCCTCTCGAGAATGGCTTCACGAAGATGGCGGCTTTCAAGAAGCTGTGCATAGTTGGTTGGAAGAAGAAGAAGAAGAGCCTTCTTCAAGTCAG GAGACAGCTCAAGTTGGTAGTAGGATTGATCCCTTTTACTTTACTGACGATGATAATGTCTACAACGAGGAGCTCAGGGAACTGCTGAGTAGGCGAAGCG TCTCTACTCTACTTCGAAGTGGCTTCCGCGAGAGCCTTGATCAGTTGATTCGTTCTTACGTAGAGAGGCAAACTCATGCTAATCTCGACTGGGACGAAAC TTCTCCCAGCATAGCAGACCAAGAGTTAGATCATCAGGATGCGGGAAGAAGACATGCTGCCTTTGACCCCAGCGCTCCGGCCCCGCCTTTGCCCCCAGCA CTCCCTGCCCAAAGACTATGGGACCGGGAGTCTCAACGTTACCAATGGCCACATCATCATGACATGAATCCTCGCTTCGGGATTGAGTGGGATATTATTA ACGACATGCGGATCGACATGGCTAGGATGGAACAAAGGATGAATAACATGCAGCGGATGATGGAAGCGTGTATGGACATGCAGCTTGAGTTACAGCGCTC GATTCGACAGGAAGTCTCTGCCGCTCTGAACCGCTCACCGACTTCTCCAGGTACATGCGTGGCCACTTTACCAGACGATCCACTCAAATGGGACCATGTG AGGAAAGGATTGTGCTGCATATGCGGAGAAAGCAACATCGATTCCTTGCTCTACAGATGCGGGCACATGTGCACATGCACAAAGTGTGCCAACGAGCTCA TCCGAACCGGCGAGAAATGCCCGATGTGTCGAGCCCCTGTGATCGAGGTCGTCCGTGCTTATTACTCCATATCCTGA
AA sequence Show only first row Show all	>Lus10021403 pacid=23179239 polypeptide=Lus10021403 locus=Lus10021403.g ID=Lus10021403.BGIv1.0 annot-version=v1.0 MAVAGLQISVLDSSFLRDSQSDAVRSRADDGRMNARASSLLRMWRELEDEHGVSHGQGRVSERLHRGEVLSNNNGGSEDVSGGESEYGQWSPRPTESENG QEDAASSDLGEMERERVRQIFREWMSSGAGGKTPRRNGSRAEWLGETEQERVRIIREWVQRNTRQRGGAHFERGDNDHGPAAGQIEQVLDSLNLRRNEGQ AEHARRGIRRVCGRQALLDMLKKAERERQRELQGLLEHRAVTGFAHRHRIQSLLRGRFLRNNRMIETERPRSTAARELGLLRQRNAVADLREGLFSRVDH SVSGQQGTNASDTSSNIDLNGDRMEQSEADDAQMVLNESPDQIEENNSYRIQDDDRNDMPATTNEDALSVEESVDRLEYDISGQAAQNIGASELERSSTF DFDERTGDNNAAPELTGEANEESEDLISESESRGMHETAAESVEWRDEHQHDETTAADDEWYENHDTAEASREWLHEDGGFQEAVHSWLEEEEEEPSSSQ ETAQVGSRIDPFYFTDDDNVYNEELRELLSRRSVSTLLRSGFRESLDQLIRSYVERQTHANLDWDETSPSIADQELDHQDAGRRHAAFDPSAPAPPLPPA LPAQRLWDRESQRYQWPHHHDMNPRFGIEWDIINDMRIDMARMEQRMNNMQRMMEACMDMQLELQRSIRQEVSAALNRSPTSPGTCVATLPDDPLKWDHV RKGLCCICGESNIDSLLYRCGHMCTCTKCANELIRTGEKCPMCRAPVIEVVRAYYSIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27950			Ring/U-Box superfamily protein...		Lus10021403 [exp]	0	1
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	1.0	0.9223
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	2.8	0.9179
AT5G17680			disease resistance protein (TI...		Lus10019708 [exp]	2.8	0.8935
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	3.5	0.9147
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	6.7	0.8979
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	7.2	0.9019
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10001718 [exp]	8.6	0.8483
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	8.8	0.8969
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	8.8	0.8822
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	10.2	0.8940

Compare expression of checked genes

Lus10021403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.