Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021408 [exp] 42 / 0.0001 AT3G45980 211 / 4e-70 HISTONE H2B, Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021407 pacid=23179217 polypeptide=Lus10021407 locus=Lus10021407.g ID=Lus10021407.BGIv1.0 annot-version=v1.0 ATGAGAACCAGAATCTCAACCTTTATCGGCCGGCGTACTGCTCGCCGTCATAACCGCCGCCATTACTGCTCTGATCTTGTTACCTCCTCCGGTGACCGCC GCCAGACGACCGTTGGAAGGTACGTAGTAATAATGAATTATTCGAATGATCACAAATATGCATGTCGGGCTCTCACAGGAGGGAATGAACAGAGCGTTTC GAGAAAGACCGGATCCCAGTCAGGGAACTCGGGATCGGCCACGAAGACCGTGCCCCCAGCACCTCCGCCTCCTATCGTCAGATCTCATCGCCCAGTCCAT ACTTCTGGTGCTTCAAAAATGACAAATGACCCTAATGGTGAATCAAAGGTTAGTTCTGGCGGCGGAAATAGTAGTCCTCCGGCAGTTCCCGTCGCCAGTG GCCAAGATGACGCTGCTCCTTTACCGGCCGGTTTCAACTACACGTACAACGAGTTCCATCCTTTCCCTAACGGCCGTGCGCCGCCGGGAACGAACGAGAC GGCGAACAATCAGACGAGACAATAA
AA sequence Show only first row Show all	>Lus10021407 pacid=23179217 polypeptide=Lus10021407 locus=Lus10021407.g ID=Lus10021407.BGIv1.0 annot-version=v1.0 MRTRISTFIGRRTARRHNRRHYCSDLVTSSGDRRQTTVGRYVVIMNYSNDHKYACRALTGGNEQSVSRKTGSQSGNSGSATKTVPPAPPPPIVRSHRPVH TSGASKMTNDPNGESKVSSGGGNSSPPAVPVASGQDDAAPLPAGFNYTYNEFHPFPNGRAPPGTNETANNQTRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021407 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	1.0	0.9825
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	1.4	0.9818
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	2.4	0.9808
AT3G47570			Leucine-rich repeat protein ki...		Lus10016896 [exp]	2.6	0.9627
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	2.8	0.9807
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	3.0	0.9407
					Lus10021406 [exp]	4.5	0.9771
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10005354 [exp]	4.9	0.9702
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032683 [exp]	5.7	0.9393
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	5.7	0.9595

Compare expression of checked genes

Lus10021407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.