Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04390 152 / 4e-44 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 139 / 9e-40 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 135 / 2e-38 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G10470 135 / 3e-37 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G37430 91 / 2e-22 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G28710 89 / 5e-22 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46080 84 / 1e-19 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G59820 82 / 4e-19 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) AT2G45120 81 / 1e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G46090 77 / 2e-17 C2H2ZnF ZAT7 C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023912 [exp] 139 / 8e-40 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 130 / 7e-37 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10023540 [exp] 122 / 2e-33 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10030330 [exp] 109 / 3e-29 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024428 [exp] 108 / 5e-29 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040425 [exp] 105 / 1e-27 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10023433 [exp] 95 / 1e-23 AT2G28710 117 / 1e-33 C2H2-type zinc finger family protein (.1) Lus10021509 [exp] 93 / 4e-23 AT5G03510 103 / 3e-27 C2H2-type zinc finger family protein (.1) Lus10040312 [exp] 92 / 1e-22 AT2G37430 112 / 8e-32 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G216900 [exp] 171 / 4e-52 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 162 / 3e-48 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 152 / 2e-44 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 145 / 8e-42 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 142 / 6e-41 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 129 / 4e-36 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 101 / 3e-26 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 100 / 8e-26 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.009G027700 [exp] 96 / 3e-24 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 96 / 4e-24 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021409 pacid=23179186 polypeptide=Lus10021409 locus=Lus10021409.g ID=Lus10021409.BGIv1.0 annot-version=v1.0 ATGGAGATGGAATCAAAAACCCAGTTCGGAGATCCGGCCAGTTTTGCAATGAAGCGCCGGCGCTCACCTTCTCCGCCGAGATCCGCCACTTCCACCACGA CGACCGCCGCCGGTTCTTCGTCCAGCTATGGAAGCACGGAGGAGGAAGACGATCAGGACATGGCGAATTGCTTGATCCTTCTAGCTCAAGGCCATCACGG TGGCAGAGGCGGTGAGAATCGCCAGAAGAGAGTCGTCGGCGGCGAGGATTCCGCCGGGTTGTTCGTCTATGACTGCAAGACGTGTAACCGTAGCTTCCCG TCGTTTCAAGCGTTGGGTGGACACCGGGCCAGCCATAAAAAGCCCAAGCCCAATCCTGGCCCTACCGAGTCGGAGGGTAAAGAAGTCATTTCGCCACCGA GTCCGCTTTTACCACCAACAAGTGTGACGGTTAAACAACTTATTCAACCCAACGCTACACAACAACTAGCTGTCAAACCCGGACCGGGAGGTAAATCCAG AAAGGTCCATGAATGCTCGATCTGTGGAGCGGAGTTTAACTCAGGGCAGGCTCTTGGGGGGCATATGAGGCGCCACAGAGCCAGCAACGGCAGTGGTCCG ACGACAACGATGGAAAGTGATCAGAGAAAAAGGAATAACGTTTTGACATTGGACCTTAACATGCCGGCTCCAGAAGATCTCGACAATCGACAAGGAGATC AATCGAAGTTTCCATTCACGTCTTCGATAGTGTTCTCGGGTCCGACCCTAGTGGGTTGTCACTATTGA
AA sequence Show only first row Show all	>Lus10021409 pacid=23179186 polypeptide=Lus10021409 locus=Lus10021409.g ID=Lus10021409.BGIv1.0 annot-version=v1.0 MEMESKTQFGDPASFAMKRRRSPSPPRSATSTTTTAAGSSSSYGSTEEEDDQDMANCLILLAQGHHGGRGGENRQKRVVGGEDSAGLFVYDCKTCNRSFP SFQALGGHRASHKKPKPNPGPTESEGKEVISPPSPLLPPTSVTVKQLIQPNATQQLAVKPGPGGKSRKVHECSICGAEFNSGQALGGHMRRHRASNGSGP TTTMESDQRKRNNVLTLDLNMPAPEDLDNRQGDQSKFPFTSSIVFSGPTLVGCHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10470	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021409 [exp]	0	1
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10017358 [exp]	2.2	0.8506
AT2G05910			Protein of unknown function (D...		Lus10033433 [exp]	14.3	0.8488
AT5G03380			Heavy metal transport/detoxifi...		Lus10014421 [exp]	15.3	0.8704
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021437 [exp]	16.2	0.8280
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10021207 [exp]	16.7	0.8531
AT2G01410			NHL domain-containing protein ...		Lus10031240 [exp]	19.7	0.8270
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	20.6	0.8226
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10003738 [exp]	21.2	0.7964
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10037065 [exp]	22.4	0.8456
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	24.5	0.8160

Compare expression of checked genes

Lus10021409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.