Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28190 272 / 3e-93 CZSOD2, CSD2 copper/zinc superoxide dismutase 2 (.1) AT1G08830 191 / 2e-62 CSD1 copper/zinc superoxide dismutase 1 (.1.2) AT5G18100 177 / 7e-57 CSD3 copper/zinc superoxide dismutase 3 (.1.2) AT1G12520 60 / 4e-11 ATCCS, CCS1 copper chaperone for SOD1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016155 [exp] 312 / 5e-109 AT2G28190 308 / 1e-107 copper/zinc superoxide dismutase 2 (.1) Lus10004139 [exp] 188 / 4e-61 AT1G08830 253 / 4e-88 copper/zinc superoxide dismutase 1 (.1.2) Lus10001719 [exp] 187 / 4e-59 AT1G08830 250 / 6e-85 copper/zinc superoxide dismutase 1 (.1.2) Lus10010651 [exp] 176 / 1e-53 AT5G18100 228 / 9e-75 copper/zinc superoxide dismutase 3 (.1.2) Lus10013615 [exp] 160 / 3e-48 AT5G18100 209 / 7e-68 copper/zinc superoxide dismutase 3 (.1.2) Lus10007031 [exp] 58 / 7e-10 AT1G12520 399 / 5e-140 copper chaperone for SOD1 (.1.2.3) Lus10006686 [exp] 57 / 1e-09 AT1G12520 393 / 6e-138 copper chaperone for SOD1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G216700 [exp] 266 / 7e-91 AT2G28190 267 / 2e-91 copper/zinc superoxide dismutase 2 (.1) Potri.009G005100 [exp] 257 / 3e-87 AT2G28190 252 / 2e-85 copper/zinc superoxide dismutase 2 (.1) Potri.013G031100 [exp] 192 / 7e-63 AT1G08830 261 / 6e-91 copper/zinc superoxide dismutase 1 (.1.2) Potri.005G044400 [exp] 191 / 3e-62 AT1G08830 266 / 5e-93 copper/zinc superoxide dismutase 1 (.1.2) Potri.013G056900 [exp] 181 / 3e-58 AT5G18100 239 / 4e-82 copper/zinc superoxide dismutase 3 (.1.2) Potri.019G035800 [exp] 177 / 1e-56 AT5G18100 237 / 3e-81 copper/zinc superoxide dismutase 3 (.1.2) Potri.009G163200 [exp] 62 / 1e-11 AT2G28190 46 / 2e-06 copper/zinc superoxide dismutase 2 (.1) Potri.001G113800 [exp] 56 / 3e-09 AT1G12520 377 / 2e-131 copper chaperone for SOD1 (.1.2.3) Potri.003G118400 [exp] 54 / 1e-08 AT1G12520 393 / 8e-138 copper chaperone for SOD1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00080 [flax] [poplar] Sod_Cu Copper/zinc superoxide dismutase (SODC)
Representative CDS sequence Show only first row Show all	>Lus10021410 pacid=23179173 polypeptide=Lus10021410 locus=Lus10021410.g ID=Lus10021410.BGIv1.0 annot-version=v1.0 ATGCAAGCAGCTGCAGCTGCAGCCATGGCGGCACACACAATCCTATCAACACCCCCGTCATTCCACTCCTTCCTCTCTCCCCTTTCAATTCCGGCTGCTC TCCACTCCACCGTCTCCCTCAGCTTCCCTCTTCGCCAACCGATCTCTTCACTCTCCCTCTCCGCTCCGGCCGCAGCCAAGAAGAAGCCTCTCACAGTCGC AGATGCCGCCAAGAAGGCCGTTGCCGTTATGAAGGGCACCTCTGACGTTGAAGGCGTCGTCACTCTGACTCAGGAAGATGATGGTCCAACGACTGTAAAT GTTCGCATCACTGGTCTCACTCCAGGGCCGCATGGGTTTCACTTGCATGAGTACGGTGACACAACGAATGGCTGCATTTCGACAGGACCGCATTTCAATC CTAACAACTTGACACATGGGGCTCCTGAAGACGAAGTCCGACATGCAGGTGACCTGGGAAACATAATTGCCAATGCTGATGGAGTAGCAGAGGCAACAAT CGTGGACAAACAGATACCTCTGACTGGTCCGAATGCGGTAGTTGGAAGGGCTTTCGTTGTCCATGAGCTCGCGGATGATCTTGGAAAAGGTGGGCATGAG CTTAGTCTGAGCACAGGCAATGCCGGAGGTAGATTGGCATGCGGTGTCGTTGGGTTGACGCCGGTGTAA
AA sequence Show only first row Show all	>Lus10021410 pacid=23179173 polypeptide=Lus10021410 locus=Lus10021410.g ID=Lus10021410.BGIv1.0 annot-version=v1.0 MQAAAAAAMAAHTILSTPPSFHSFLSPLSIPAALHSTVSLSFPLRQPISSLSLSAPAAAKKKPLTVADAAKKAVAVMKGTSDVEGVVTLTQEDDGPTTVN VRITGLTPGPHGFHLHEYGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIIANADGVAEATIVDKQIPLTGPNAVVGRAFVVHELADDLGKGGHE LSLSTGNAGGRLACGVVGLTPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10021410 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010909 [exp]	2.6	0.8956
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	4.7	0.8708
AT3G20680			Domain of unknown function (DU...		Lus10006345 [exp]	6.3	0.8586
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10034022 [exp]	8.4	0.8281
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	8.5	0.8286
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	8.8	0.8396
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	8.9	0.8146
AT1G51370			F-box/RNI-like/FBD-like domain...		Lus10027020 [exp]	9.2	0.8405
AT1G26761			Arabinanase/levansucrase/inver...		Lus10037153 [exp]	9.5	0.8510
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10025111 [exp]	11.0	0.7797

Compare expression of checked genes

Lus10021410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.