Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016154 [exp] 1208 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G005300 [exp] 1102 / 0 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10220 [flax] [poplar] Smg8_Smg9 Smg8_Smg9
Representative CDS sequence Show only first row Show all	>Lus10021411 pacid=23179237 polypeptide=Lus10021411 locus=Lus10021411.g ID=Lus10021411.BGIv1.0 annot-version=v1.0 ATGGACTCGATCAACCCTCCACCCCTTCGGGTCCTCGCCCGCCCACCACCTTCTCGAGCTCCGACCTCAACCGTTCCCTCCCGCCCTCCTCCTCGCCCCG TTCCCCCCGCCTCGCTGGAGCCCCAGCCTCCTCCTCCACCTCCGTCGTCGACGGCGACGAACTCTCTTCCTCCACAGTCTCAGCCTCGATCCTCCGGAGG CGGCGTGACCGTGGTGGGTTTCGTCTCCCGCAACTCGGACCACTCCTCCCAGCTCATAAACCGGGTAATCGACTCCAACGTGTTCGGTTCGGGTAAACTG GACCGGGTATTCACTGTCGAGAGTGAGGAAGTTGGGGATTGGTTTAGTCGGAGGAGGATCAGGTACTATCACGACGAGGAGAGAGGGATGCTGTTCTTGC AGTTTCGCGAGTCCCGATCGGGTTTGGATGAGTCCGAGCTGGAGGATCTTCAGGGTTTGCTCTTCATGTTCTCTGTCTGCCATGAGATCATATACATTAT GGAGGGTTCACGAGTTGACACCCATATCTTCAGTAAGTTAAGAGTGTTACAAGGAGCCAAGCACGCATTGGTTCCATATTTCAAGTCGAAGAGTTCATCG AGGGGTCATCAAGGTTCCAGCTCTTCTATGGCAGCATCATCGTCGAATCCTTTGCCGCGTGGTAGAACTGGCGGTGGCATGAGTCGAAATGCTTCGTCTG TCTCTCTAATGTCAGGCTCAGGATCTTATAGCTCATTGTATCCTGGATGTTGTACTCCGGTTATACTCTTCGTTTTTGTTGATGATTTTCCAGAGGGGTT GAATGGTAGTTCGAATGTGGAGGAGTCTACAGATGCTTCTCGGTCAAGCTTGCCAACGAAAGGTTCTGGTTCAGTTGTTGTACTGGCACGTCCTCCTCCG GTTAAATCTGAAGGAGGCGTTAGGAAGAAAATGCAGTCATCGATAGAAGCTCAAATTCGTTTTTTGATAAAGAAGTGTCGGGTTCTTTTAGGTTCTGAAG TTGGTCATGGTGGTTCTAGAGGTGGTGGAGGTGGAGGTGTTTCGAGCTCAGCGCCATTGTTCTCGCTTGATGCATCGAGGGCAGTTGTGCTGCTGGACAG GTGTACAGTTCAGGGAGTCGAATCTCTGGATTTCGCTACCAAATTGGTGGACGAAGTTTTAAATGGGAAAGCATCACCGGATTCTCTCTTGCTTGAAAGT AATGTCCAAAGTGGGAACAAAGAAGATGTTTCATTGATCAAGGAGTTTCTACTGAGGCAATCTGATATTCTAAGAGGTAGAGGAGGATTCGTAGCTGGCG GTAATGGCGTCGGGATGGCGGCTGTTGCTGCTGCGGCAGCTGCTGCCTCTGCTGTTTCAGGGAAGACATTTTCTGTTCCCGAACTTCCGAGTTTTGACAT ATGGTTGTCAAACAGCCGACAATTGTTGCATGGATTGCTCTCTGCAAAGCTTGTTCTTGCTGATGACATGGAAATTAATAGAAGACAAACACGTCAAAGA AATGCTGAAGGGATTGGTTCCAGGAGTATAGATCCTGTAGATTTGTCGGTATCTTTGCTGGAAAAAGCCACAGGGCTGGTTTCGAAATTCTCAATGTCAT GGTGTGAAAAAGCTCTTCCAACTGCTAAGGATATTTATTTGCGGGACTTGCCTCCTTGTTACCCAACTTCAGTACACGAGACCCATCTTGCAAATGCTTT GCGAGGTTTTTACTCAATGGTCAGGGGCCCTGCAGTGGAGACGTTTGCCAAAAGGCTGGAAGATGAATGCACAAATGTATGGAAATCCGGTAGGCAACTA TGTGATGTTGTTAGTTTGACTGGGAAACCATGCATGCACCAAAGGCATGATGATGTTAGTTCCAGCCAGACACTAACAGAAGGTGCAGCAAAGTCGCACT GTAGCGGATACTTTTTCCTTCACGCATGTGCATGTGGCCGTTCTCGTCAACTACGTCCTGATCCGTTTTCTTTCGAGTTCGCAAATGCTTCGAATTGCTT TCCAGATTGTGAGAAAGGCCTTTCTTTGGTGCAATTACCGGTTCAACCATCCTCTTGGACTCTGATTCGTGTTGGAGGAGCAAGATACTATGAGCCTTCT AAGGGTTTAATCCAGAGTGGGTTTTCCGTCACACATAAGTTTCTGTCAAGGTGGATTATATTGCTTGAGAAACCGTCTAGTACTTCTCAATTAGGTTCTG TGTGTAGTCCTATGGTGCAACCACAGTTAGATCTAAATTCTGAGGTGGATAGAAAGAAAGTTGATGATACACAGTTGTTCTCCGCAGAAATCCAGACCAG GAATTCCAATCATACAAAACAGTTGGAAAATGGGAGATCTGATGAAAAGAAGATTAGCTTTGGTATGGGTCTTCCGAATCTTACGATGAGAAAACCATTT TCTGAAGTGGTGGCAGGATCTTCAACCAGAGATTCAGGTTTTCCTCCTCTTCAGCACAGGAGGTATCCTACAACAGTATCAGACAAATCTATCCAGCAAA ACAAGTCTAGAGATTCAACTACAGAACAGGTTCATGGATCTCAGAAATCTGAAGGTGTTTCATCATCCCTGAAAATTTCAAAAGGACCCTTTTCTGTTGA TAGTTCCGGTGGTGACCCTTTACTAAGAATAGGAAGTAATGTAGTTCCTATGAGCATTAATAGCGGGGTAGCAACCAAATCAAATCCTGTGGTGAAGCAT GCAGTTGTTTATTTTGGTTTGGAGCATGAATGTCCCTATGGCCATCGTTTTCTTCTGAATGAAGATCATCTCAATGAGCTAGGATCTGCATACTCCATGC AGAAAGAATCTAATGTGTCCAATGGGGAAACGTCAAACCGAGATCCAACTGTTCCTTCTAGCTCGGGTAGGAAGGGTGGCCGTGGTAAAGTTTTTCGGAA TTCCGGAAGTATGAATGTCACTACTGGGAATAGAATGAGAAATGCAGAGAAGTCTAAAGAGATTAACAGGATTGATCACCTCTCTGGTGCCGGTAGTGGC CAAAGCCAGAGGGCAATCAATGCTTCAGTAGACCCTAACTGTGTGAAAGATCTTGGCATGAACCTTCAATCTCTTAGCATGGATGACAATGGAAGTTCAT CTTCCATGTTGAATAGAAATATACCACTTTTCATGAACTGTCCATATTGCCGGCTCTCCAAGGGTAAGAAGGAGCCCAAGATCAATTTTGCTGGCACAAT CTCTCAACTCCAGAGGATCTTTCTGTACTGTTACAAGCCTGTTGTATGGATAGATTGCAATGAGATGCTACTAAAGATGGTCACGCCTCCATTTCCAGTT GTTTTAGCTGTAAGCCCTGTTATCCAGTTTGAGGCGTCCTGCCTTCCACCATCTGTTGTAGACCGGGAGCAGAAACTGCAGTTCACCATTGGGAGCCAAG TCATTCTGCCACCAGAAAGTTTCCTCACTCTCCGACTTCCATTTGTTTACGGTGTCCAGCTGGAGGATGGACGTCAGCATCCTCTTGGTGCTTTTGAGCA TCAACCCGAGACCACTGCCTGGATTGTAAAGGGCACCGCATTGCATGTCGTTTCTAAGCAAAACAACCTTCCCCGGGAATCACAGACATAA
AA sequence Show only first row Show all	>Lus10021411 pacid=23179237 polypeptide=Lus10021411 locus=Lus10021411.g ID=Lus10021411.BGIv1.0 annot-version=v1.0 MDSINPPPLRVLARPPPSRAPTSTVPSRPPPRPVPPASLEPQPPPPPPSSTATNSLPPQSQPRSSGGGVTVVGFVSRNSDHSSQLINRVIDSNVFGSGKL DRVFTVESEEVGDWFSRRRIRYYHDEERGMLFLQFRESRSGLDESELEDLQGLLFMFSVCHEIIYIMEGSRVDTHIFSKLRVLQGAKHALVPYFKSKSSS RGHQGSSSSMAASSSNPLPRGRTGGGMSRNASSVSLMSGSGSYSSLYPGCCTPVILFVFVDDFPEGLNGSSNVEESTDASRSSLPTKGSGSVVVLARPPP VKSEGGVRKKMQSSIEAQIRFLIKKCRVLLGSEVGHGGSRGGGGGGVSSSAPLFSLDASRAVVLLDRCTVQGVESLDFATKLVDEVLNGKASPDSLLLES NVQSGNKEDVSLIKEFLLRQSDILRGRGGFVAGGNGVGMAAVAAAAAAASAVSGKTFSVPELPSFDIWLSNSRQLLHGLLSAKLVLADDMEINRRQTRQR NAEGIGSRSIDPVDLSVSLLEKATGLVSKFSMSWCEKALPTAKDIYLRDLPPCYPTSVHETHLANALRGFYSMVRGPAVETFAKRLEDECTNVWKSGRQL CDVVSLTGKPCMHQRHDDVSSSQTLTEGAAKSHCSGYFFLHACACGRSRQLRPDPFSFEFANASNCFPDCEKGLSLVQLPVQPSSWTLIRVGGARYYEPS KGLIQSGFSVTHKFLSRWIILLEKPSSTSQLGSVCSPMVQPQLDLNSEVDRKKVDDTQLFSAEIQTRNSNHTKQLENGRSDEKKISFGMGLPNLTMRKPF SEVVAGSSTRDSGFPPLQHRRYPTTVSDKSIQQNKSRDSTTEQVHGSQKSEGVSSSLKISKGPFSVDSSGGDPLLRIGSNVVPMSINSGVATKSNPVVKH AVVYFGLEHECPYGHRFLLNEDHLNELGSAYSMQKESNVSNGETSNRDPTVPSSSGRKGGRGKVFRNSGSMNVTTGNRMRNAEKSKEINRIDHLSGAGSG QSQRAINASVDPNCVKDLGMNLQSLSMDDNGSSSSMLNRNIPLFMNCPYCRLSKGKKEPKINFAGTISQLQRIFLYCYKPVVWIDCNEMLLKMVTPPFPV VLAVSPVIQFEASCLPPSVVDREQKLQFTIGSQVILPPESFLTLRLPFVYGVQLEDGRQHPLGAFEHQPETTAWIVKGTALHVVSKQNNLPRESQT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021411 [exp]	0	1
AT3G58560			DNAse I-like superfamily prote...		Lus10029338 [exp]	2.4	0.9048
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	2.4	0.9331
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	4.9	0.9141
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10008998 [exp]	6.6	0.8362
AT3G06670			binding (.1.2)		Lus10037742 [exp]	9.8	0.8645
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10042409 [exp]	10.2	0.8700
AT1G69290			Pentatricopeptide repeat (PPR)...		Lus10037077 [exp]	11.8	0.8329
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000471 [exp]	13.6	0.8834
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Lus10000967 [exp]	14.5	0.8731
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10042900 [exp]	14.9	0.8428

Compare expression of checked genes

Lus10021411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.