Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22900 359 / 5e-112 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 343 / 7e-106 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT2G13620 327 / 6e-100 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G08140 317 / 5e-96 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT2G28180 311 / 1e-93 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT3G44930 296 / 1e-88 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT5G22910 290 / 3e-86 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT3G44920 285 / 1e-84 ATCHX11 cation/H+ exchanger 11, cation/H+ exchanger 11 (.1) AT3G44910 278 / 5e-82 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT1G08150 272 / 2e-79 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016153 [exp] 994 / 0 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021413 [exp] 869 / 0 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10016152 [exp] 852 / 0 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021414 [exp] 635 / 0 AT3G44900 274 / 6e-82 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10037374 [exp] 574 / 0 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 558 / 0 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10043128 [exp] 350 / 2e-108 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10030013 [exp] 330 / 2e-100 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 324 / 6e-98 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098300 [exp] 363 / 7e-114 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 360 / 1e-112 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G105200 [exp] 350 / 2e-108 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098600 [exp] 266 / 2e-77 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.006G176800 [exp] 259 / 7e-76 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G171200 [exp] 259 / 5e-75 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.013G153200 [exp] 258 / 2e-74 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G099000 [exp] 252 / 2e-72 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.007G111400 [exp] 248 / 2e-70 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.004G131300 [exp] 240 / 8e-68 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10021412 pacid=23179242 polypeptide=Lus10021412 locus=Lus10021412.g ID=Lus10021412.BGIv1.0 annot-version=v1.0 ATGTGCGCAAAAGAGCCCTCCTACGAGAACATCAACATCTTGGACAACCTTCTCTCCGCTGCATTGCCTCTCCTCAACATCCAAATCCTCCTCATTTTCG TCGTCAGCAACTCCCTCAATTTCCTCCTCAAGCGCCTTCGAATCCCCTCCTTCGTTGGGCAAGCATTGACCGGAGTCATTTTAGGACCAACCGGATTAGG TCGGACCGATTTCTTCAAGAACAAGCTATTCCCACATAGCTCACAGACCAACTTGGAATTGATAGCATACATAGGATACGGCACCTTCATGTTCTTGGTC GGAGTGAAAATGGACATGGCAACGTTTATGAACGCGCGCAAGAAAGTGATGACGATCGGATTAGGATCGTTGATCTTTCCTGTATTCGTCGCGCTAGCCG CCCAACAACAGAAAATTAACAGCTCCAAGAGCAGAACGCTCATCGCACAGATCATCGCCATCACAGAAGTCCAGTCCGTCACCAGTTTCGCCGTTGTTTC GCATCTCCTCAACGAGCTCAGACTCACAAACTCAGAGGTCGGCAGGTTGGCCATGTCTTCTTCTTTGATTGCGGGATCATGCAGCTTAGTCTTCCAGTTC CTTACATCAGCCTTGGCTAAGAACGTTGAGAATCACACACGACTATCGGACGTAGGAGGAGTGCTTGTCGCCATGCTATTTGCATCGTTCGTTCTTCGCC CTGTGGTGATTAGCCTTGTGGTAAAGAAGACTCCACCGGAAGAACGTGTGAACCCGGGTTGGGTCGCCACAATCTTGGCTATGGCAACAGCTTACGAAGT TTTCTTCGATACAAGAAGGGAGGCTTTCATTCTCGGACCTTTCCTCTTCGGCCTTCTTGTTGTTCCGCCAGGGCCGCCATTGGGTTCTTCATTGGTGCAA ACTTTGGAACCATTTCCTCAAGCTGTGTTCTTTCCCGTGTTCGTCGCCATGACGGTGATGAAAGCCGATTTGGGCAGCGTGTTTTCGGATTTTGATGGCA GAGCCTACTTCAGTGCTCTCATCTTCTGGGTTGCAGTTCTCAAGTTTGGTATCTGCTTGCTTCTTGCTATCCGATGGATGTCCATGCTCGACTCGATCGT GCTCTCTCTGATCATGAGCTCAAAGGGAATCGTCGACATCTCCATCCATGCGTACATGCGAGACGTCCAGAGGATGTTGCCACAGCTCTTCTCACTGTTC ATCCTCGCCATCGTAGTCAACGCCACGGTGATCCCGATAGTAGTGAGCTTCCTCTACGAGCCGACGAGGAGGTACGCGAGGTACCATTCAAAGAACATCT TCGCATTGAAGCCGTTCACCGAGCTTCGAATCCTAACATGCATTCACAAGCTTCACCACGTTCCGTTGGTGACGAAACTGCTCGACGCTCTGTGTCGAAC TGAAGAGAGCGTGGTGGCTCTATACGTAATCCACCTCCTCGAACAGATCGGCCACGCCACACCCATATTTTTGTGCCACCAAAAGCATAAGAAATCATCA TCGTTGGCGATTTCAGACTCATCCTCCATTGATATGAATCACGTGGTCTTCGCCTTCACTCAGTATGAGAGGAAGAACGTTGGGTTCACATCGCTCCAGA GCTTCACGTCGATCTCGCAATACAAGTTTATGCAGGAAGACATTTTCACGCTAGCGCTCGACAAGCTCGTCTCCATGATACTGATCCCATTCCACCGACA GTGGTCGTCGGTGGACGGGATGGTTGAGACCGAGGACAACGTCCTCAGGACGTTGAACAAGAGGATCCTCGACACAGCTCCTTGCTCTGTCGGGATCCTA TATGACCGCAAGGGCTTTAGATCGCACAGCAGTGTTTCGAAAAAACACACCGACTCATTATCACAAGCATCAATAACATCATCATCTCTTTCGGTATGCA TGATCTACCTCGGGGGCCGAGACGATCAAGAGGCCATAAGCCTAGCCAAACGAATGGTGACCGACCCGACGGTCCACTTAACCATTATTCACATGGTTAG CGACGTAGTTGATCATGGTTCAAACAATAACATCAACGACACCGTCGTGCTAAGAGGGGTTCTGCAGGAAACCGCAGACCGGCTCAATGTGCAGTACCTA GAGAGAGTCGTGAGCGATGCAACCGAGACCACGAGGCTGGTTTCCTCTGTAGCTAGCCAATACGATCTCTTTGTCATCGGGAGGAGATTGGATATCGACA TGGAGTCTCCTCAGACTGCTGGCCTGGCGAATTGGAGCGAGTTCCCGGAACTCGGAGTCATCGGAGACCTGCTGGCCTCCAAAGATGTCCAAACCAGAGG CTCCGTATTAGTGGTACAGCAACAAAAGAGAAGCTAA
AA sequence Show only first row Show all	>Lus10021412 pacid=23179242 polypeptide=Lus10021412 locus=Lus10021412.g ID=Lus10021412.BGIv1.0 annot-version=v1.0 MCAKEPSYENINILDNLLSAALPLLNIQILLIFVVSNSLNFLLKRLRIPSFVGQALTGVILGPTGLGRTDFFKNKLFPHSSQTNLELIAYIGYGTFMFLV GVKMDMATFMNARKKVMTIGLGSLIFPVFVALAAQQQKINSSKSRTLIAQIIAITEVQSVTSFAVVSHLLNELRLTNSEVGRLAMSSSLIAGSCSLVFQF LTSALAKNVENHTRLSDVGGVLVAMLFASFVLRPVVISLVVKKTPPEERVNPGWVATILAMATAYEVFFDTRREAFILGPFLFGLLVVPPGPPLGSSLVQ TLEPFPQAVFFPVFVAMTVMKADLGSVFSDFDGRAYFSALIFWVAVLKFGICLLLAIRWMSMLDSIVLSLIMSSKGIVDISIHAYMRDVQRMLPQLFSLF ILAIVVNATVIPIVVSFLYEPTRRYARYHSKNIFALKPFTELRILTCIHKLHHVPLVTKLLDALCRTEESVVALYVIHLLEQIGHATPIFLCHQKHKKSS SLAISDSSSIDMNHVVFAFTQYERKNVGFTSLQSFTSISQYKFMQEDIFTLALDKLVSMILIPFHRQWSSVDGMVETEDNVLRTLNKRILDTAPCSVGIL YDRKGFRSHSSVSKKHTDSLSQASITSSSLSVCMIYLGGRDDQEAISLAKRMVTDPTVHLTIIHMVSDVVDHGSNNNINDTVVLRGVLQETADRLNVQYL ERVVSDATETTRLVSSVASQYDLFVIGRRLDIDMESPQTAGLANWSEFPELGVIGDLLASKDVQTRGSVLVVQQQKRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10021412 [exp]	0	1
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	2.8	0.9562
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	4.6	0.9490
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	4.7	0.9536
AT5G44390			FAD-binding Berberine family p...		Lus10026290 [exp]	5.2	0.9358
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	6.3	0.9490
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	6.7	0.9433
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	7.7	0.9410
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	9.2	0.9389
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10019231 [exp]	9.5	0.9248
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Lus10033283 [exp]	9.8	0.9369

Compare expression of checked genes

Lus10021412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.