Plant FIBer expression Database

Lus10021413 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G13620 387 / 3e-122 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
AT3G44900 380 / 9e-120 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
AT1G08150 375 / 1e-117 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1)
AT5G22910 373 / 6e-117 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1)
AT5G22900 369 / 4e-115 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1)
AT2G28180 352 / 1e-108 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1)
AT1G08140 348 / 2e-107 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1)
AT3G44930 347 / 3e-107 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1)
AT3G44910 337 / 6e-104 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1)
AT1G06970 318 / 5e-96 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016153
[exp]
993 / 0 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Lus10021412
[exp]
955 / 0 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1)
Lus10016152
[exp]
880 / 0 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Lus10021414
[exp]
655 / 0 AT3G44900 274 / 6e-82 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Lus10041344
[exp]
630 / 0 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1)
Lus10037374
[exp]
623 / 0 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Lus10043128
[exp]
385 / 1e-121 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Lus10030013
[exp]
385 / 5e-121 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Lus10035312
[exp]
385 / 1e-120 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G176400
[exp]
413 / 1e-132 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Potri.007G105200
[exp]
406 / 1e-129 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Potri.018G098300
[exp]
397 / 2e-126 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1)
Potri.018G098600
[exp]
379 / 2e-119 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Potri.019G123700
[exp]
334 / 4e-102 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Potri.006G176800
[exp]
330 / 5e-102 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1)
Potri.010G183000
[exp]
317 / 8e-96 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Potri.016G127800
[exp]
298 / 5e-89 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1)
Potri.004G131300
[exp]
299 / 8e-89 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Potri.010G171200
[exp]
297 / 9e-89 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0064 CPA_AT PF00999 Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence
>Lus10021413 pacid=23179174 polypeptide=Lus10021413 locus=Lus10021413.g ID=Lus10021413.BGIv1.0 annot-version=v1.0
ATGATGAGCACATCGGAGTACTTCATTTGGAAAAACAAAACAGTTTGCAATTGCTTTCCGCCGAAGGTAAGCGCCGAAGGTCTTTCATACGAAAACACCA
ACATTGTCGACAATCTTCTCTCGGGTTCCCTGCCGCTCCTCAACATCCAAGTCCTCCTCATTTTCAGCCTCAGTAATGCCCTCAATTACTTCCTTAAGAG
CCTTCGAATCCCGACTTTGGTTGGTCAAGCCCTGTCAGGAGTCATTTTGGGACCAACCCTATTGGGGAGAACAGAGTTCTTCAAGACAAAGCTGTTCCCA
CGTAGCTCCCAATTCAACTTGGAAATGGTAGCATATATGGGGCTCTCCACCCTTTTATTCTTCGTCGGAGTGAAAATGGACATAAGAACGGTGATCAACT
CCGGCACGAAAGTGTTGACGATCGGAATAACGTCCATGATGCTGCCTATGATTGCTGGAATAGCCGCCCAGAGCCAGAGAATCCACAGCACCACGAGCCA
ATTCGCCATCACGCAAATTTTCACGGTCATTGGATTCCATGCAGTCACCACTATCACCGCCGTTTCGCAGCTCCTTGAAGAGCTCAGACTCACCAACTCG
GAGATCGGCAGGTTGGCCTTGTCTATCTCTTTAGTTACAGGATCGTTGAGCGGGTTCCTCCAATTCTTTTCGTTATCCTTAGATATGGATATATTGAACC
TAGTAGGAGCACTCTTCTCCATCCTGATTGCATTGTTCGTTCTGCGCCCTGCAATGGTTAGGCTTGTGATAAAGCGGACTCCACCTGGAGAGCGTGTGAA
ACCATGTTGGGTCTTCGTGATCCTGGCAATGGCTATGACTTACCAAATTTTCTTCGATGCGATTGGGCAGAGTTTCGCTCTTGGTCCTTTCGTCTTTGGA
CTTTTTGTTATTCCTCCGGGGCCGCCGTTGGGTTCTTCATTGGTCGAAACTCTCGAACCATTTGTTCAAGCCGTGGCACTTCCCGTGTACGTCGCCATCA
CAGTGATGAAAGCAGATTTGAGCAGCGTGTTCCAAGTGTTTGATGACAGATATCACTTCATTAGTCTCATCTACTGGACTGCAATTCTCAAGTTTTCTGT
CTGCTTGCTTTTGTCTCTCCGATGGATGCCTGTGCTCGATTCCATTGTGCTCGCTTTGATCATCAACGCGAAGGGCATCGTTGACATGACCATGTTTGCA
CACTTGCGAGACTACCAGGTGATATTGCCACAGGTGTTCTCATTGTTCATGCTCGCCATGATAATCTTTCACGCCACGGTAATCCCAATCCTAGTGAGCT
TTCTCTACGAGCCGGCTAGGAGGTATAAAAGCTACCATTCGAAGAACATCTCTGCACTGAAGCCCTTCACCGAGCTTCGAATCCTGGCATGCATTCACAA
GCCTCACCATGTTGTATCGATGACTAGACTGCTCGACACTTTGTGTCAAACAGAAGAGAGTGTGGTGGCTCTCTATGTTATCCACCTCCTTAAGCAGATT
GGTCATGCCACGTCGGTGTTCATGTGTCACCAGAAACATGGGAAATCTTCGACCCCACCGACTGCTGTAGACTCCCACTCCATGCCCTCTATTGACGTCG
CCTTTGCCTACGCTCAGTACGAGAGGAAGAACATCGGGTTGACGTCAGTACAGAGCTTCACCTCGATCTCGCAGTACACATTGATGCAGGAAGACATCTT
CACCCTGGCGCTAGACAAGCTCGTCTCCCTGATACTGGTCCCATTCCACCGACAATGGTCGTTGGATGGGACCATTGAGTCTGAGGACATTGTCCTCAAG
GCATTGAACATGAGGATCCTCGACACAGCTCCCTGCTCTGTCGGGATCCTCTATGATCGTCGACGAAGGAGATTGAAACCGCAAGATAGTGCGGTATCAG
AAAGATACAGTGCCTGCGACACATCCTCATCTTGTTCGGTGTGCATGATCTATCTCGGGGGTAGAGACGACAACGAGGCCATAAGCTTGGCAAAGCGGAT
GGCCAACGACCCGTGCATCAACTTAACCATAATGCATATGGCCGTTAATGAAGAAGCCCATGCCATTGACATTGAAGGCAATGCGGTGCTGAGGAAAGTT
CTGCAAGAGACCATAGGTCACCCGAACGTTCAGTACCTAGAGAAAGTCGTGAATGACGGAAACCAGACTGCCAGGCTAGTTTCCGCCATAGCCGGTCAGT
ACGATCTCTTCATCGTCGGAAGGAGATCCGACATTGACATGGATTCACCTCAGACCGAGGGGCTAGCGAACTGGAGTGAGTTTCCGGAACTCGGAGTAAT
TGGGGACCTACTAGCCTCCAAAGATGTCTACACTAGAGGCTCAGTGTTAGTGGTACAACAACAAAAGAAGCTAACAAGTAAAAAGAAGAAAATAAATTGT
TATGGAAATTTGTGA
AA sequence
>Lus10021413 pacid=23179174 polypeptide=Lus10021413 locus=Lus10021413.g ID=Lus10021413.BGIv1.0 annot-version=v1.0
MMSTSEYFIWKNKTVCNCFPPKVSAEGLSYENTNIVDNLLSGSLPLLNIQVLLIFSLSNALNYFLKSLRIPTLVGQALSGVILGPTLLGRTEFFKTKLFP
RSSQFNLEMVAYMGLSTLLFFVGVKMDIRTVINSGTKVLTIGITSMMLPMIAGIAAQSQRIHSTTSQFAITQIFTVIGFHAVTTITAVSQLLEELRLTNS
EIGRLALSISLVTGSLSGFLQFFSLSLDMDILNLVGALFSILIALFVLRPAMVRLVIKRTPPGERVKPCWVFVILAMAMTYQIFFDAIGQSFALGPFVFG
LFVIPPGPPLGSSLVETLEPFVQAVALPVYVAITVMKADLSSVFQVFDDRYHFISLIYWTAILKFSVCLLLSLRWMPVLDSIVLALIINAKGIVDMTMFA
HLRDYQVILPQVFSLFMLAMIIFHATVIPILVSFLYEPARRYKSYHSKNISALKPFTELRILACIHKPHHVVSMTRLLDTLCQTEESVVALYVIHLLKQI
GHATSVFMCHQKHGKSSTPPTAVDSHSMPSIDVAFAYAQYERKNIGLTSVQSFTSISQYTLMQEDIFTLALDKLVSLILVPFHRQWSLDGTIESEDIVLK
ALNMRILDTAPCSVGILYDRRRRRLKPQDSAVSERYSACDTSSSCSVCMIYLGGRDDNEAISLAKRMANDPCINLTIMHMAVNEEAHAIDIEGNAVLRKV
LQETIGHPNVQYLEKVVNDGNQTARLVSAIAGQYDLFIVGRRSDIDMDSPQTEGLANWSEFPELGVIGDLLASKDVYTRGSVLVVQQQKKLTSKKKKINC
YGNL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G13620 ATCHX15 CATION/H+ EXCHANGER 15, cation... Lus10021413
[exp]
0 1

Lus10021413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.