Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44900 268 / 1e-79 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 256 / 2e-75 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT5G22910 256 / 2e-75 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT2G13620 249 / 1e-72 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT2G28180 234 / 3e-67 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT1G08140 233 / 7e-67 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT1G08150 232 / 2e-66 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT3G44930 210 / 1e-58 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT3G44910 199 / 5e-55 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT2G28170 194 / 4e-53 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016152 [exp] 924 / 0 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10016153 [exp] 738 / 0 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021412 [exp] 710 / 0 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10021413 [exp] 655 / 0 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10037374 [exp] 454 / 4e-151 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 452 / 5e-150 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10035312 [exp] 266 / 1e-78 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 265 / 3e-78 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10043128 [exp] 263 / 7e-78 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G176400 [exp] 268 / 6e-80 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G105200 [exp] 266 / 8e-79 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098300 [exp] 257 / 7e-76 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.019G123700 [exp] 229 / 2e-65 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098600 [exp] 226 / 1e-64 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.016G127800 [exp] 205 / 6e-57 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.006G176800 [exp] 199 / 3e-55 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.019G123800 [exp] 196 / 5e-54 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 194 / 8e-53 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 192 / 2e-52 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10021414 pacid=23179247 polypeptide=Lus10021414 locus=Lus10021414.g ID=Lus10021414.BGIv1.0 annot-version=v1.0 ATGCCAACAACGATCGAGCCGCCGGCAATCATCTGGCAAAACGAAATAGTTTGTTACGCTTTCCCGACAAGGACGACTACGGGAGGTCTTTCAATCAACG ACCCTTTCTCGGTTGCATTGTCTCTCGTCAGCATCCAAATCCTCCTCATCTTCGTTATCAGCAATTCCTTGAATTTCTTCCTCAGGCGCCTCGGAATCCC TTCCTTCGTTGGGCAAGCCCTGACAGGAGTCATATTGGGACCAACCCTATTGGGGAGAACAGAGTTCTTCCGGAACGAGTTGTTCCCACACAGCTCACAG AAAATATTGGAAATAGTAGGATTCATCGGATACGCCACCTTCATGTTCTTGGTCGGGGTGAAAATGGACGTGTCGACGGTGATGAACTCCGGCAAGAAAG TCATGACGATCGGTATAGCTGCCATGATCTTGCCTCTGGTCTTCGGTTTAGCCGCCCAACAATCAAAAATCCGAAGCGCCGAGAGCAAATATGTCGTCTC CCAAATCTTCGGGGTCACCGGAACCCAGTCCCTCACGGCCTTTGCTGTTGTCTCGCAGCTCCTCAGCGAGCTCAAGCTCACAAACTCGGAGATTGGCCGG TTCGCCTTGTCCGCCGCCTTGGTTACCGGATCGTGCGGGTCGTTCCTTCAGCTTTGCTCCGCAGCCTTAGCTTCAGACCTAGTAATCGAGAAACGGTTAT TTCATGTAGTAGGAATCACCTTGCTCATTATAATTGCATGGTTCGCCATTCGCCCCGCAATGGTTAGCCTCGTGATAAAGAGGACTCCGGCGGGAGAACG TGTGAACCCAATTTGGATCATCATGATCCTGGCAATGGCGACGACTTACCAAATCCTCTTCGACGTATTTAGGCAGCCTTTCATTATTGGTCCTTTCGTC TTCGGGCTCCTTGCTATTCCTCAAGGGCCGCCGCTGGGTTCCTCATTGGTGGAAGCTCTAGAGTCAGTTCCCCAGCATGTGTTCTTTCCCGTGTTCGTCG CTATGACGGTGATGAAAGCAGATATGGCCTTTGTGTTTACGGATTTCGATAATAAAGCTTACTTCGTCGCTCTCATCTACTGGACCGCACTTCTCAAGTT TGTTATCTGCCTGTTTCTTGCCCTCCCATGGATGCCTGCGCTCGACTCTGTCGTGCTCTCTCTGATCATGAACTCCAAGGGTGTTGTCGATATCTCCAGT CATGCATACATGCGAGATGTTCGGAAACTACCGGTAGAGATATACTCACTGTTCATCTTCGCCATCATAGTCAACGCCACGGTGATCCCTATCCTGCTGG CCGTCCTCTACGAGCCGTCGAGGAGGTACGCGAGCTACCATTCGAGGAACATCTTCGCGTTGAAGCCCTTCACCGAGCTTCGAATCCTCGCTTGCATTCA CAAGCCTCACCATGTTGTATCAGTGACGAAACTGCTCGACACTTTGTGTCGAACAGAGGAGAGCGCGGTGGCTCTCTATGTAATCCACCTTCTTGAGCAG ATCGGCCACGCCACGCCCATGTTCATATCTCACCAGAAGCAGAAGAAATCGTCATCAGCGGTTTTGGACGACTCCTCTGCCTCGGCCTCCGTTGACATCA TGTTCGCCTTCGGTCAGTACGAAAGGAGGAACATCGGATTCACATCGCTCCAGAGCTTCACTTCGATATCGCAGTACAAATCAATAGTTAATGCAGGAAG ACATCTTCACGCTCGCGCTCGACAAGCTAGTCTCCCTAATACTGATCCCTTTCCATCGACAATGGTCAATAGATGGGGGCATCGAGTCCGAGAACAATGT ACTCAGAGCGCTGAATAG
AA sequence Show only first row Show all	>Lus10021414 pacid=23179247 polypeptide=Lus10021414 locus=Lus10021414.g ID=Lus10021414.BGIv1.0 annot-version=v1.0 MPTTIEPPAIIWQNEIVCYAFPTRTTTGGLSINDPFSVALSLVSIQILLIFVISNSLNFFLRRLGIPSFVGQALTGVILGPTLLGRTEFFRNELFPHSSQ KILEIVGFIGYATFMFLVGVKMDVSTVMNSGKKVMTIGIAAMILPLVFGLAAQQSKIRSAESKYVVSQIFGVTGTQSLTAFAVVSQLLSELKLTNSEIGR FALSAALVTGSCGSFLQLCSAALASDLVIEKRLFHVVGITLLIIIAWFAIRPAMVSLVIKRTPAGERVNPIWIIMILAMATTYQILFDVFRQPFIIGPFV FGLLAIPQGPPLGSSLVEALESVPQHVFFPVFVAMTVMKADMAFVFTDFDNKAYFVALIYWTALLKFVICLFLALPWMPALDSVVLSLIMNSKGVVDISS HAYMRDVRKLPVEIYSLFIFAIIVNATVIPILLAVLYEPSRRYASYHSRNIFALKPFTELRILACIHKPHHVVSVTKLLDTLCRTEESAVALYVIHLLEQ IGHATPMFISHQKQKKSSSAVLDDSSASASVDIMFAFGQYERRNIGFTSLQSFTSISQYKSIVNAGRHLHARARQASLPNTDPFPSTMVNRWGHRVREQC TQSAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10021414 [exp]	0	1
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	5.8	1.0000
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	5.8	1.0000
					Lus10003763 [exp]	7.1	1.0000
					Lus10006079 [exp]	10.6	1.0000
					Lus10010414 [exp]	13.0	1.0000
					Lus10010663 [exp]	13.7	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	14.3	1.0000
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	15.0	1.0000
AT1G15780			unknown protein		Lus10023978 [exp]	15.9	1.0000
					Lus10034359 [exp]	16.5	1.0000

Compare expression of checked genes

Lus10021414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.