Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44900 114 / 6e-30 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 111 / 5e-29 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44920 106 / 3e-27 ATCHX11 cation/H+ exchanger 11, cation/H+ exchanger 11 (.1) AT3G44930 106 / 4e-27 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT2G30240 103 / 2e-26 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT1G08150 101 / 2e-25 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT2G28180 101 / 2e-25 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT2G28170 99 / 1e-24 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1) AT1G08140 99 / 2e-24 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT1G06970 99 / 2e-24 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016152 [exp] 291 / 3e-95 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021413 [exp] 221 / 2e-68 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10021412 [exp] 216 / 1e-66 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10016153 [exp] 214 / 8e-66 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 154 / 4e-44 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10037374 [exp] 151 / 7e-43 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10006166 [exp] 107 / 3e-28 AT3G44900 101 / 3e-23 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10043128 [exp] 101 / 2e-25 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10013423 [exp] 97 / 9e-24 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171200 [exp] 108 / 4e-28 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G099000 [exp] 103 / 3e-26 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 103 / 3e-26 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.018G098600 [exp] 103 / 4e-26 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.018G098300 [exp] 103 / 5e-26 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.007G105200 [exp] 99 / 2e-24 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 93 / 2e-22 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.010G182900 [exp] 91 / 1e-21 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.006G176800 [exp] 89 / 6e-21 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.003G194100 [exp] 86 / 3e-20 AT1G79400 597 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021415 pacid=23179220 polypeptide=Lus10021415 locus=Lus10021415.g ID=Lus10021415.BGIv1.0 annot-version=v1.0 ATGGATGCATTCTCGGAAGCATCATCGCTTGCACCGTCCACCCGTTCGGTCTGCATGATCTACCTCGGCGGTCGGGATGATCACGAGGCCATAAGCCTAG CCAAGCGGATGGCGAACGATCCGTGTGTCCACTTGACCATAATGCATGTGCTTAGTGAAGAATCTCAAGCTTCCGAGGTCGAAGGAAGCGTAGTGTTGAA AGGTGTTTTGCAGGAAACTGCAGAAAACCTCAACGTGCACTACATGGAGAAAGTCGTGAGCGATGGAACCGACACCGCGAGGGTGGTTTCTTCCATAGCC GGTCAGTATGATCTCTTCGTGGTCGGGAGGAGATCGGACATTGACATGGAATCGCGTCAGACCGCAGGGCTGGCGAACTGGAGTGAGTTTCCGGAACTCG GAGCCATCGGAGACCTACTTGCCTCCAAAGATATCCATACTAGAGGCTCTGTATTAGTGGTGCAGCAACAAAAGAAGGTAAAGTAA
AA sequence Show only first row Show all	>Lus10021415 pacid=23179220 polypeptide=Lus10021415 locus=Lus10021415.g ID=Lus10021415.BGIv1.0 annot-version=v1.0 MDAFSEASSLAPSTRSVCMIYLGGRDDHEAISLAKRMANDPCVHLTIMHVLSEESQASEVEGSVVLKGVLQETAENLNVHYMEKVVSDGTDTARVVSSIA GQYDLFVVGRRSDIDMESRQTAGLANWSEFPELGAIGDLLASKDIHTRGSVLVVQQQKKVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28180		CHX08, ATCHX8	CATION/H+ EXCHANGER 8, Cation...		Lus10021415 [exp]	0	1
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	6.8	0.9553
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10026641 [exp]	7.7	0.8934
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10010819 [exp]	8.9	0.8709
AT3G14880			unknown protein		Lus10013711 [exp]	9.6	0.9544
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10034524 [exp]	11.6	0.9542
AT1G13810			Restriction endonuclease, type...		Lus10033589 [exp]	12.2	0.8749
					Lus10038463 [exp]	13.9	0.9536
					Lus10018225 [exp]	15.5	0.9521
					Lus10020933 [exp]	16.6	0.8125
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10034704 [exp]	16.6	0.6864

Compare expression of checked genes

Lus10021415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.