Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28160 191 / 7e-61 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT5G57150 85 / 3e-20 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G29930 75 / 6e-17 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G16910 75 / 6e-16 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 64 / 3e-12 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G10610 62 / 1e-11 bHLH bHLH090 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G01260 59 / 1e-10 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G46760 58 / 3e-10 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G12860 57 / 6e-10 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G17880 57 / 1e-09 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016151 [exp] 286 / 6e-98 AT2G28160 235 / 1e-75 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Lus10006951 [exp] 69 / 3e-14 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10030880 [exp] 67 / 4e-13 AT2G16910 224 / 7e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030970 [exp] 64 / 4e-12 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10018787 [exp] 64 / 5e-12 AT4G16430 447 / 8e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024871 [exp] 63 / 6e-12 AT4G16430 448 / 5e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030609 [exp] 61 / 5e-11 AT2G16910 239 / 1e-74 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030243 [exp] 58 / 3e-10 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10005966 [exp] 58 / 4e-10 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G005600 [exp] 200 / 4e-64 AT2G28160 236 / 8e-76 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Potri.018G141600 [exp] 75 / 1e-16 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074900 [exp] 75 / 1e-16 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141800 [exp] 71 / 5e-15 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141700 [exp] 70 / 9e-15 AT5G57150 205 / 4e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074700 [exp] 69 / 2e-14 AT5G57150 175 / 2e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141500 [exp] 67 / 1e-13 AT5G57150 214 / 1e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.009G136300 [exp] 67 / 2e-13 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G074800 [exp] 64 / 2e-12 AT5G57150 181 / 1e-56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.002G172101 [exp] 64 / 2e-12 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021416 pacid=23179204 polypeptide=Lus10021416 locus=Lus10021416.g ID=Lus10021416.BGIv1.0 annot-version=v1.0 ATGAAGGAGAAGCTTTATGCTCTTAGATCTTTGGTTCCCAACATCACTAAGATGGATAAGGCGTCGATCATCGGCGATGCGGTGTCGTACGTGCAAGATC TTCAACTCCGATCGAAGAAGCTACAATCTGAAATTGCTGGACTAGAGGCATCATTACTAGCTAATGATGCACAACAAAATTCCCAATTTGGAGGACCAAA TGGTAGCAAACCAAGAAATCAAAGTACCAAAAAGATATTAACGCAGATGGATGTCTATCAAGTAGAGGAAAGAGGATATTTCGTGAGATTAGTATGTAAC AAAGGGGGAAATGTCGTTGTTTCGCTTTACAAGGCATTGGAATCGCTTGTGAATTTCACTATTCAGAGCACGAACTTGACCTCCTCGGCCTCCAACAAAT TCATATTCACTTTTAATTTACTTGTTAGAGAAATCCAGCAACAACAACACATCAACTTGCCAAACTTGAAGTTGTGGGTGACTAGTTCATTGTTGAACGA AGGATTTGAGCTTCTAACCTTGTGA
AA sequence Show only first row Show all	>Lus10021416 pacid=23179204 polypeptide=Lus10021416 locus=Lus10021416.g ID=Lus10021416.BGIv1.0 annot-version=v1.0 MKEKLYALRSLVPNITKMDKASIIGDAVSYVQDLQLRSKKLQSEIAGLEASLLANDAQQNSQFGGPNGSKPRNQSTKKILTQMDVYQVEERGYFVRLVCN KGGNVVVSLYKALESLVNFTIQSTNLTSSASNKFIFTFNLLVREIQQQQHINLPNLKLWVTSSLLNEGFELLTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10021416 [exp]	0	1
AT1G17750		AtPEPR2	PEP1 receptor 2 (.1)		Lus10032945 [exp]	12.2	0.6844
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041282 [exp]	22.5	0.6638
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041153 [exp]	32.2	0.6536
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10003204 [exp]	37.2	0.6345
					Lus10018645 [exp]	67.5	0.6394
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	138.8	0.6181
AT2G26470			unknown protein		Lus10025870 [exp]	190.9	0.5951
AT4G28650			Leucine-rich repeat transmembr...		Lus10014243 [exp]	255.1	0.5825

Compare expression of checked genes

Lus10021416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.