Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28150 431 / 1e-146 Domain of unknown function (DUF966) (.1) AT5G59790 180 / 2e-51 Domain of unknown function (DUF966) (.1) AT3G46110 151 / 1e-41 Domain of unknown function (DUF966) (.1), Domain of unknown function (DUF966) (.2) AT5G10150 124 / 5e-31 Domain of unknown function (DUF966) (.1) AT1G05577 102 / 1e-23 Domain of unknown function (DUF966) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016150 [exp] 871 / 0 AT2G28150 451 / 2e-154 Domain of unknown function (DUF966) (.1) Lus10040860 [exp] 214 / 5e-64 AT5G59790 301 / 1e-98 Domain of unknown function (DUF966) (.1) Lus10004943 [exp] 201 / 6e-59 AT5G59790 303 / 4e-99 Domain of unknown function (DUF966) (.1) Lus10005887 [exp] 174 / 1e-48 AT5G59790 293 / 5e-95 Domain of unknown function (DUF966) (.1) Lus10030328 [exp] 124 / 3e-32 AT5G59790 126 / 8e-34 Domain of unknown function (DUF966) (.1) Lus10003286 [exp] 122 / 3e-31 AT5G59790 127 / 2e-33 Domain of unknown function (DUF966) (.1) Lus10037468 [exp] 99 / 3e-22 AT1G05577 166 / 4e-47 Domain of unknown function (DUF966) (.1) Lus10003921 [exp] 93 / 2e-20 AT1G05577 159 / 2e-45 Domain of unknown function (DUF966) (.1) Lus10005442 [exp] 68 / 5e-12 AT5G59790 294 / 4e-96 Domain of unknown function (DUF966) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G005800 [exp] 563 / 0 AT2G28150 531 / 0.0 Domain of unknown function (DUF966) (.1) Potri.004G216200 [exp] 561 / 0 AT2G28150 501 / 2e-173 Domain of unknown function (DUF966) (.1) Potri.005G078300 [exp] 170 / 1e-47 AT5G10150 272 / 1e-87 Domain of unknown function (DUF966) (.1) Potri.009G027500 [exp] 167 / 3e-46 AT5G59790 333 / 6e-111 Domain of unknown function (DUF966) (.1) Potri.001G235700 [exp] 166 / 5e-46 AT5G59790 343 / 6e-115 Domain of unknown function (DUF966) (.1) Potri.008G051000 [exp] 155 / 3e-43 AT5G59790 188 / 1e-56 Domain of unknown function (DUF966) (.1) Potri.010G209600 [exp] 150 / 2e-42 AT5G59790 161 / 2e-47 Domain of unknown function (DUF966) (.1) Potri.009G024900 [exp] 106 / 2e-24 AT1G05577 233 / 2e-72 Domain of unknown function (DUF966) (.1) Potri.001G232300 [exp] 103 / 8e-24 AT1G05577 231 / 4e-72 Domain of unknown function (DUF966) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06136 [flax] [poplar] DUF966 Domain of unknown function (DUF966)
Representative CDS sequence Show only first row Show all	>Lus10021417 pacid=23179151 polypeptide=Lus10021417 locus=Lus10021417.g ID=Lus10021417.BGIv1.0 annot-version=v1.0 ATGGAGACGAGAATGAACAAGTACAACAGGCAGCAGCTGAGTCCAGACCGGGCAAAAGTGTGGATGGAGAGATCACCGAAGTATCATCAGAATCGAAGAG TCCCCGTTGTTTACTATCTTTGCCGGAATCGCCAGCTCGAGCATCCTCATTTCATCGAAGTCCCTATCTCCTCCCCGGACGGTCTCTATCTCAGAGATGT GATTGAAAAGCTTAATGTGCTCAGAGGCAGAGGGATGGCTTCCATGTACTCGTGGTCCAGCAAGAGAAGCTACAAGAGTGGATTTGTTTGGCATGATCTT TCTGAGGATGATCTGATTCTTCCTGCTCATGGAAATGAGTATGTTCTTAAAGGTTCTGAACTATTTGAAAACTCCAATCTAGCTGCGGTTGAGTATGGTG GTTCTCCAGATCATGGAACGATAAAGACGAAGAATCTGAAGCAATTGCCCGAACCACCATCATCTAGGAGTCAAGAGGATTCATCTTCTTCATCAAGCAT GTACGGAAAGGAGACGAAACACTCCCAGGAGGAGGACGATGAGCTTTCTCCTCCAACCCAACTTGCTTGTTCCTCCATCTTATCTCCAGAATCTGGAGTT GGGAAGAATTCATCTTGGAACGGTTCTCTCGGGTTGACAGAATACAAGGTCTATAAGTCTGACAGGGTTGTACATACTTCTACACAGACAGATGAGGAAG TGAGCAGAGCTGTAACCAGAGAGACTTGCACTAGAGGGGTTTCGACCGATGATGGCACGTTAGAAAGGCAGGCTCCCTGCAAGAACGAGTACTCTGATAA GGTGGGAACTGAGAATTCATCCTTTTCTCCACCAGCATCTACTTCTGGTGCGTCTAATTCATCCAGCGGCAGAACCGAAACGCTGGAGTCTTTGATCAGA GCCGATGCTAATAAGATCAACAGCTTTCGAATCCTCGAAGAGGAAGATGTTCGAATGTCAGCCAATCCGAGACTCAAGGCCACGAATGTGTTGATGCAGC TGATCTCTTGCGGGTCTGTTTCGGTGAAAGATCACAGCTTTGGACATATCCCAACCTACAAGCCGAGATTCTCCCATTCGAAGTATGGCTCTCCGTTGCT TTCCAGTTCCATACTGTTGGGAGAGGTTGAAAGCTTATCGGATCACCCGAGGCTGATGAGCATGCGGTTAGAGGATAAAGAGTACTTCAGTGGGAGCTTG ATCGAGTCGAAATTGCTTACCGAAGAAGCTAAACTATCGACGCTGAAACGCTCTTCTTCTTACAATGCAGATCGCAGTGCCTCCAAACCATCGAATCCAA GCAAGAACACTGGCGAATCGACCTCCACAGTACAATCAAAGTGCATTCCCCTACCAATGAAGGTCTCGTTAAGCAAGTACTCGCCTACCTCAGAAAAGCC TCGAAACTCGTCCGATGGCTCCCAACATGACAGCAAGAGAATCACAGATCCCGTCTCCTGCACGAATCCGTCCGACAACAATGTGATCCACATTGAAGAA AGTTGA
AA sequence Show only first row Show all	>Lus10021417 pacid=23179151 polypeptide=Lus10021417 locus=Lus10021417.g ID=Lus10021417.BGIv1.0 annot-version=v1.0 METRMNKYNRQQLSPDRAKVWMERSPKYHQNRRVPVVYYLCRNRQLEHPHFIEVPISSPDGLYLRDVIEKLNVLRGRGMASMYSWSSKRSYKSGFVWHDL SEDDLILPAHGNEYVLKGSELFENSNLAAVEYGGSPDHGTIKTKNLKQLPEPPSSRSQEDSSSSSSMYGKETKHSQEEDDELSPPTQLACSSILSPESGV GKNSSWNGSLGLTEYKVYKSDRVVHTSTQTDEEVSRAVTRETCTRGVSTDDGTLERQAPCKNEYSDKVGTENSSFSPPASTSGASNSSSGRTETLESLIR ADANKINSFRILEEEDVRMSANPRLKATNVLMQLISCGSVSVKDHSFGHIPTYKPRFSHSKYGSPLLSSSILLGEVESLSDHPRLMSMRLEDKEYFSGSL IESKLLTEEAKLSTLKRSSSYNADRSASKPSNPSKNTGESTSTVQSKCIPLPMKVSLSKYSPTSEKPRNSSDGSQHDSKRITDPVSCTNPSDNNVIHIEE S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28150			Domain of unknown function (DU...		Lus10021417 [exp]	0	1
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	1.4	0.9121
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	3.5	0.8779
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10037384 [exp]	9.9	0.8328
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	10.6	0.8628
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018459 [exp]	11.4	0.8741
AT2G28150			Domain of unknown function (DU...		Lus10016150 [exp]	11.7	0.8150
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	12.0	0.8499
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	13.2	0.8401
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10030692 [exp]	13.8	0.8600
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10007386 [exp]	16.2	0.8618

Compare expression of checked genes

Lus10021417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.