Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08130 946 / 0 ATLIG1 DNA ligase 1 (.1) AT1G49250 766 / 0 ATP-dependent DNA ligase (.1) AT1G66730 464 / 8e-146 AtLIG6 DNA LIGASE 6 (.1) AT5G57160 81 / 3e-15 ATLIG4 DNA ligase IV (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016149 [exp] 1361 / 0 AT1G08130 1015 / 0.0 DNA ligase 1 (.1) Lus10017623 [exp] 494 / 1e-156 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1) Lus10020013 [exp] 57 / 7e-08 AT5G57160 1352 / 0.0 DNA ligase IV (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G005900 [exp] 972 / 0 AT1G08130 1073 / 0.0 DNA ligase 1 (.1) Potri.004G094200 [exp] 480 / 2e-151 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1) Potri.018G141900 [exp] 83 / 7e-16 AT5G57160 1372 / 0.0 DNA ligase IV (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF04679 [flax] [poplar] DNA_ligase_A_C ATP dependent DNA ligase C terminal region CL0078 [flax] [poplar] DNA_ligase PF01068 [flax] [poplar] DNA_ligase_A_M ATP dependent DNA ligase domain CL0078 [flax] [poplar] PF04675 [flax] [poplar] DNA_ligase_A_N DNA ligase N terminus
Representative CDS sequence Show only first row Show all	>Lus10021418 pacid=23179253 polypeptide=Lus10021418 locus=Lus10021418.g ID=Lus10021418.BGIv1.0 annot-version=v1.0 ATGCAAACTCTTCTTCAATCCTTCATCTCTCTCCTCTCATTCCCCGTCGCTCCTCTCCGCCGCCGCCCAATTTCCTTACTCTCATCCCCCCTCTTCCCAA TCCCAAAATCCTCTTCTTCTTATCCCGTTTTCCTAAACCCTAAATCCCACATGTCGAATCGCCCCAACGCATTCGACGTCCTCAAATCCAACGCCAAAGC CGCTTACAAGAAGAAACCAACTCAGTCCCAGTCCTCTCCGTCGAAGAAACGCAAGTCCCCGGAACCCGAAAATCCTAAACCCGTGCTGGGTCCGATCGAG AAAGGGAAGCTACCGGAATCTGATATTCAGTATCCGATTGAGCAGAAATCGGAGCTTCCGGCGGCGGCCAAGGCTTCAAATGGTGGGACGAGTACAACGT CGTTTTTCTCCTCCTCCAAGACAACGCGGAGTGAAGGAAAAGTAGAGGAACTGAAGGGAAAGGTTGGAGCTTTGAAGAAGAAGGCGAAAGAATTTGACCC GAAGAAAGTGGCGTGCTGGGAGAAAGGAGAGAAAATTCCGTTCATCTTTGTCTCGCTGGCGTTTGACATGATTTCGAATGAGAGTGGGAGGATTGTGATC ACTGATATCGTGTGTAATATGCTGAGGACAGTTATGGAGACGACTCCCGACGATTTGCTTCCTGTTGTTTACTTGCTGGCGAACAAAATTGCTCCTGGTC ATGAAGGGATTGAGCTTGGGATCGGGGAAGCGATCCTGATCAAAGCTTTGGCCGAGGCTTATTCCAAGATGGAGAGGGATGTTAAGAAGATGTACCAGGA AATGGGAGATTTGGGGCTTGTTGCTAAAGCCAGCCGTAGGACTCAAAGGACCATGTCTCAGCCTGAGCAGTTAACCGTTTCGAAAGTTTTCGACACCTTT CGATTGATTGCCAAGCAATCTGGTAAGGACAGTCAAGACAGCAAGCGGAAACATATAAAGGGACTTCTCGTGGCGGCCATCGACTGTGAGCCTCAGTATA TTATGCGGTTGCTTCAGTCGAAGTTGCGTATTGGTTTCTCAGAGCAGACTCTTTTGGCTGCTTTGGGTCAGGCTTCTGTGTATATCGAGAACCATTCTAA GCCGCCTTCACATGTCAAGTCTCCTTTAGAAGAGGCGAGTTGTTTTGCAGTGCAAATTGTCAAGGGAGTCTACTCTGTCCTTCCTGTATATGACATAATT GTCCCAGCGCTTCTCAATAACGGTGTATGGAATCTTTCCAAGACATGCAACCTTATGCCTGGTGTTCCTGTTGCACCTATGCTCGCCAAATCGACTAAGG CTGTTTCTGAGATAGTAAATAAATTCCAGGATATAGAGTTTACTTGTGAATACAAGTACGATGGAGAACGTGCTCAGATACATTATACTGAGGATGGTTC AGTTGAGATATACAGTCGCAATGCTGAGCGAAACACTGGAAAATTTCCTGATGTCGTGGCTACGATTTCAAGGCTGAAGAAGTCTTCTGTCCAATCATTT ATTCTGGACTGCGAACTGGTTGCCTATGACCGAGAAAAGAAGAAGATTCTGCCCTTTCAGATCCTTAGTACTCGTGCCCGCAAAAATGTGGTCATCAGTG AGATAAAGATTGATGTGTGCATATTTGCTTTCGACATATTGTATCTTAATGGAGAACCACTTATTCAGGAACAACTGGAAGTTCGCCGAGAGCGGCTGTA CAGTTCATTTGAGGTGGAACCTGGGTTTTTCCAGTATGCCACAGCATTAACGTCTAACGACCTCGAGGAAATACAGAAATTTCTCAATGCAGCTGTTGAT TCAAGATTGATTTTATGTATCTTGTCTCATTCTTTGGAGTGTACTGTGGAAGAGTTTGATAGGTTGCGTCTATCAACTTTCTTGAGCCTGTATTCTTCTT TTGGTCACAGTTCTGAGGGTTTGATAATCAAAACGCTGAATAAAGATGCTACATATGAACCATCAAAACGATCACGGAACTGGCTAAAACTGAAGAAAGA TTACATGGAAAGCCTTGGTGATTCATTTGATTTGGTACCTATCGGTGCTTTCCATGGAACTGGGAAGCGCACAGGATTCTATGGTGCTTTTCTCCTTGCT TGTTATGACAATGACAAAGAGGAATATCAAACCATTTGTAAACTGGGTACGGGATTCAGCGAAGCACAACTAGAAGAGCATTCGACTAGACTCCGTTCTA AAGTGATTATTGAACCAAAGTCATACTACAGGTTCGGAGAGAAGTTGAATCCTGATGTGTGGTTTGAGCCTTGTGAGGTTTGGGAGGTGAAAGCTGCAGA TTTGACAATCAGTCCGGTTCATTGTGCGGCCATTGGTGCTGTGGATCCTAACAAGGGTATTTCTCTTCGGTTCCCACGAATGTTACGAGTCAGAACAGAC AAGGCTCCAGAGGCAGCTTCATCAGCAGAACAGGTGGCTGAGATGTACAATGCTCAAAAGCACAATCAGCCGAACCCTGATGCCGATGACGAAGATGATT GA
AA sequence Show only first row Show all	>Lus10021418 pacid=23179253 polypeptide=Lus10021418 locus=Lus10021418.g ID=Lus10021418.BGIv1.0 annot-version=v1.0 MQTLLQSFISLLSFPVAPLRRRPISLLSSPLFPIPKSSSSYPVFLNPKSHMSNRPNAFDVLKSNAKAAYKKKPTQSQSSPSKKRKSPEPENPKPVLGPIE KGKLPESDIQYPIEQKSELPAAAKASNGGTSTTSFFSSSKTTRSEGKVEELKGKVGALKKKAKEFDPKKVACWEKGEKIPFIFVSLAFDMISNESGRIVI TDIVCNMLRTVMETTPDDLLPVVYLLANKIAPGHEGIELGIGEAILIKALAEAYSKMERDVKKMYQEMGDLGLVAKASRRTQRTMSQPEQLTVSKVFDTF RLIAKQSGKDSQDSKRKHIKGLLVAAIDCEPQYIMRLLQSKLRIGFSEQTLLAALGQASVYIENHSKPPSHVKSPLEEASCFAVQIVKGVYSVLPVYDII VPALLNNGVWNLSKTCNLMPGVPVAPMLAKSTKAVSEIVNKFQDIEFTCEYKYDGERAQIHYTEDGSVEIYSRNAERNTGKFPDVVATISRLKKSSVQSF ILDCELVAYDREKKKILPFQILSTRARKNVVISEIKIDVCIFAFDILYLNGEPLIQEQLEVRRERLYSSFEVEPGFFQYATALTSNDLEEIQKFLNAAVD SRLILCILSHSLECTVEEFDRLRLSTFLSLYSSFGHSSEGLIIKTLNKDATYEPSKRSRNWLKLKKDYMESLGDSFDLVPIGAFHGTGKRTGFYGAFLLA CYDNDKEEYQTICKLGTGFSEAQLEEHSTRLRSKVIIEPKSYYRFGEKLNPDVWFEPCEVWEVKAADLTISPVHCAAIGAVDPNKGISLRFPRMLRVRTD KAPEAASSAEQVAEMYNAQKHNQPNPDADDEDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10021418 [exp]	0	1
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	3.3	0.9461
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10019336 [exp]	5.3	0.9366
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10020573 [exp]	5.5	0.9390
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	6.5	0.9431
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Lus10022440 [exp]	6.5	0.9372
AT5G55830			Concanavalin A-like lectin pro...		Lus10016620 [exp]	8.5	0.9414
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	9.6	0.9398
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	14.7	0.9332
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10014524 [exp]	15.0	0.9197
AT1G63810			unknown protein		Lus10026014 [exp]	17.4	0.9265

Compare expression of checked genes

Lus10021418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.