Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22930 101 / 2e-26 Protein of unknown function (DUF1635) (.1) AT3G44940 84 / 6e-20 Protein of unknown function (DUF1635) (.1) AT2G28140 77 / 3e-17 Protein of unknown function (DUF1635) (.1) AT2G28690 44 / 3e-05 Protein of unknown function (DUF1635) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016148 [exp] 168 / 2e-53 AT5G22930 104 / 4e-28 Protein of unknown function (DUF1635) (.1) Lus10038677 [exp] 54 / 8e-09 AT5G22930 121 / 2e-33 Protein of unknown function (DUF1635) (.1) Lus10037944 [exp] 53 / 2e-08 AT5G22930 131 / 3e-37 Protein of unknown function (DUF1635) (.1) Lus10005884 [exp] 49 / 8e-07 AT2G28690 185 / 2e-58 Protein of unknown function (DUF1635) (.1) Lus10040864 [exp] 48 / 1e-06 AT2G28690 197 / 2e-63 Protein of unknown function (DUF1635) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006000 [exp] 123 / 1e-34 AT5G22930 134 / 3e-38 Protein of unknown function (DUF1635) (.1) Potri.004G216100 [exp] 114 / 4e-31 AT5G22930 140 / 8e-41 Protein of unknown function (DUF1635) (.1) Potri.008G032500 [exp] 63 / 7e-12 AT5G22930 75 / 5e-16 Protein of unknown function (DUF1635) (.1) Potri.010G229200 [exp] 62 / 1e-11 AT5G22930 77 / 2e-16 Protein of unknown function (DUF1635) (.1) Potri.008G010100 [exp] 48 / 9e-07 AT2G28690 147 / 4e-43 Protein of unknown function (DUF1635) (.1) Potri.006G256801 [exp] 45 / 1e-05 AT2G28690 162 / 1e-48 Protein of unknown function (DUF1635) (.1) Potri.001G235200 [exp] 44 / 3e-05 AT2G28690 166 / 3e-50 Protein of unknown function (DUF1635) (.1) Potri.009G027100 [exp] 44 / 3e-05 AT2G28690 156 / 3e-46 Protein of unknown function (DUF1635) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07795 [flax] [poplar] DUF1635 Protein of unknown function (DUF1635)
Representative CDS sequence Show only first row Show all	>Lus10021419 pacid=23179179 polypeptide=Lus10021419 locus=Lus10021419.g ID=Lus10021419.BGIv1.0 annot-version=v1.0 ATGGAAACCCATCGAAACCCTCTTCTCAATTGGGCTTACTTCTGCCATGGAAAGAGCATGGAAGACCTAAGAAACTCACTGCTCTACACAACTCTGGAGC TCGAGCAAACGCGAATAGCAGCACAGGAGGAGCTCCAAAGGCGAGACGAGCATCTGATCCAGCTCAGGGATCTTCTAGAAAGGGCGAAATTGGAAAGAGA CGAACTTTCCGAGAAATGCCAGCGGCTCATGTTCGAAAACTTGCTGATTCACCACCAAATTCCTTCGGTAGTTCATCAAATCTCGTCGGGAGTTTCCGGA ATCGAGGATGTAGAGCCGAGATTGGGTATCGACTCGACGAACAACAACGGGTTCTCGTCCTTTTCTTCGTCGGATTGCGAGGAGAGCATCGTCTCCTCGC CAGAAACAGGGGAGCCTCCTTTGCCGGCGCCGGAGAAGCCGCTGCCGGAGAAGGGGAAGCTTTTAGAGGCAGTGATGAAGGCGGGCCCACTTTTGAAGAC CTTGCTTCTTGCTGGTGGTCCGCTTCCTCAGTGGAATCACCCGCCTCCGCCTCTCGAGTCGTTCCAGATACCGCAGACCCCCCGCCGGTGA
AA sequence Show only first row Show all	>Lus10021419 pacid=23179179 polypeptide=Lus10021419 locus=Lus10021419.g ID=Lus10021419.BGIv1.0 annot-version=v1.0 METHRNPLLNWAYFCHGKSMEDLRNSLLYTTLELEQTRIAAQEELQRRDEHLIQLRDLLERAKLERDELSEKCQRLMFENLLIHHQIPSVVHQISSGVSG IEDVEPRLGIDSTNNNGFSSFSSSDCEESIVSSPETGEPPLPAPEKPLPEKGKLLEAVMKAGPLLKTLLLAGGPLPQWNHPPPPLESFQIPQTPRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22930			Protein of unknown function (D...		Lus10021419 [exp]	0	1
AT2G27090			Protein of unknown function (D...		Lus10026763 [exp]	4.0	0.8227
AT1G64620	DOF	AtDof1,8	Dof-type zinc finger DNA-bindi...		Lus10033218 [exp]	4.9	0.8042
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10025995 [exp]	5.0	0.8253
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10015013 [exp]	8.8	0.7913
AT1G65440		GTB1	global transcription factor gr...		Lus10029079 [exp]	9.2	0.7843
AT4G18630			Protein of unknown function (D...		Lus10025403 [exp]	10.1	0.8060
AT3G11590			unknown protein		Lus10021324 [exp]	11.2	0.7990
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	12.6	0.8004
AT5G47900			Protein of unknown function (D...		Lus10019798 [exp]	13.4	0.7908
AT3G22420		ZIK3, WNK2, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10004904 [exp]	13.4	0.7952

Compare expression of checked genes

Lus10021419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.