Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04320 73 / 5e-14 Shugoshin C terminus (.1.2) AT3G10440 57 / 1e-08 Shugoshin C terminus (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016147 [exp] 118 / 6e-30 AT2G28130 238 / 6e-74 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006100 [exp] 159 / 2e-46 AT5G04320 86 / 1e-18 Shugoshin C terminus (.1.2) Potri.004G216000 [exp] 152 / 1e-43 AT5G04320 57 / 4e-09 Shugoshin C terminus (.1.2) Potri.010G229100 [exp] 82 / 2e-17 AT5G04320 77 / 5e-15 Shugoshin C terminus (.1.2) Potri.008G032600 [exp] 80 / 1e-16 AT3G10440 72 / 2e-13 Shugoshin C terminus (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07557 [flax] [poplar] Shugoshin_C Shugoshin C terminus
Representative CDS sequence Show only first row Show all	>Lus10021420 pacid=23179153 polypeptide=Lus10021420 locus=Lus10021420.g ID=Lus10021420.BGIv1.0 annot-version=v1.0 ATGGTAAGTGAACGGCCGGCGAAGAGATCTCCGATTGGGAGAAGAACGCTCTCCGACATTACCAACAACCAGTCCCAGCCGCCGCTGAAATTAGCCGTTG TTAAAGAGAACAACTCCCAGATCCACGATACTCCCGGTGACTTGGTCAATCGCCTTCTTCAGGAGAAAGCTACGCTGATGCAAATGGTGGAGGAGAGGAA TAAATTGTTAGAGATGAGTGCAACGCAATTGCAGAATCTGAGAATGAGGTATCAGGCGTTGCTACTGCAGAACCGTAGTCTTGCTCAATCGCATAGCCAG ATGTTAACTTTTGTTTTGTTGCGCTCAGGTACTTACTCTTATGCTCATTTGGTCTCTCTCCAGGAGCTTAATTCAGGGAAAGATCGGCTGAAGAACTTGC AGCATGATCTCATGTGCAAAGAGGCCTTGCTCAAATCCAGACACGTGGAACCTGAGGCAAACCCAGATATAGACTCTCGAAAAGCTATTGCCGAGGTGAA GGAAGCAAACAATAACAAGAAACCTAGCAACCGTGGCAGAAAGAAAGGCACCAGAAGCCAATCAATGGGCTCAACTACAGTTCAACCCGATGTAGAAAAA GAGAAGGCTGAAAGCAAAAGACGATCCTCAAGAAGACAATCTGCAGGGTTCGTCGAAAGGAAGCCAGAAGATACTGACTTGTTTGAGATAGAGAAAGCCA CATTTGTAGTGTCAAAGTCATCAATGGTGGATGAAGATATCTCTGAACAGAGAGATAAACCACTAGGAGAGGCAGCATCAAGTAAATCTTCCATGGGAGG GCACCACTCCGACAAAGAACCCGAAACCAAAAGGCGATGCTTGAGAAGGCAGTCTGCTATAGGGTTCGTCGAGTCCCATAAGAGTGAGCCAGAGAAGAAC TTGCTTCAGATAGAAGCACGTAGAACTTCGATGGGGCGACCGGTACGAAGAGCTGCGGAGAAGGTATGCTCCTACAAAGAACCTTCACTTATTGAGAAAA TGCGGAGGCCAGTTTGA
AA sequence Show only first row Show all	>Lus10021420 pacid=23179153 polypeptide=Lus10021420 locus=Lus10021420.g ID=Lus10021420.BGIv1.0 annot-version=v1.0 MVSERPAKRSPIGRRTLSDITNNQSQPPLKLAVVKENNSQIHDTPGDLVNRLLQEKATLMQMVEERNKLLEMSATQLQNLRMRYQALLLQNRSLAQSHSQ MLTFVLLRSGTYSYAHLVSLQELNSGKDRLKNLQHDLMCKEALLKSRHVEPEANPDIDSRKAIAEVKEANNNKKPSNRGRKKGTRSQSMGSTTVQPDVEK EKAESKRRSSRRQSAGFVERKPEDTDLFEIEKATFVVSKSSMVDEDISEQRDKPLGEAASSKSSMGGHHSDKEPETKRRCLRRQSAIGFVESHKSEPEKN LLQIEARRTSMGRPVRRAAEKVCSYKEPSLIEKMRRPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04320			Shugoshin C terminus (.1.2)		Lus10021420 [exp]	0	1
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	2.0	0.9735
AT3G01710			TPX2 (targeting protein for Xk...		Lus10032115 [exp]	2.2	0.9536
					Lus10027307 [exp]	5.7	0.9484
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10011376 [exp]	6.0	0.9521
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Lus10011508 [exp]	6.6	0.9588
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	7.1	0.9604
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10009764 [exp]	7.5	0.9435
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	7.9	0.9622
AT3G01710			TPX2 (targeting protein for Xk...		Lus10014571 [exp]	8.4	0.9519
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10018049 [exp]	9.2	0.9406

Compare expression of checked genes

Lus10021420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.