Plant FIBer expression Database

Lus10021421 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28130 395 / 3e-134 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016147
[exp]
481 / 1e-168 AT2G28130 238 / 6e-74 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G006200
[exp]
494 / 4e-173 AT2G28130 417 / 3e-143 unknown protein
PFAM info
Representative CDS sequence
>Lus10021421 pacid=23179238 polypeptide=Lus10021421 locus=Lus10021421.g ID=Lus10021421.BGIv1.0 annot-version=v1.0
ATGGACTTCATGGACACCGACGACCAACTCGATTTCGAATTCGAAGATCCACTTCCCGCTCCCGATAACACCAGCATGCGGAGGAAGAAAGTGGTTGGTC
TGGATGATCTGTTGACTGATTACTACAAGGAGAAGAGTAAAGTCATCGAGAGGGAGTCGAAACGGGCAAAGGCAGCGAAATACTATGACTCAGATGAGAG
TGATGAAGAAGCTTTACTGTCCAAAACTATTGCGGATTGTCACTTCAAGGCATTGCTATGCATAGATGAAGTGGGATGCGTTGAAGAGAACTTCACTTGG
GGTATGCAAGTTTTCGGAGAGAAGAAATCAGCACCACCTCTCGTCTTCCCCGAGCTTGGAAGTAACTCTATGTTGAAGTCTTTCATGAGCAACAAGCTGA
ATTCCATGGTGAAACTCACTGTAGATGAAGGAGAAGGATTTTTTGAAGGATTACTTTTGAATGGCTGGCTCTCGGAAGTGGTCAGTAGATGTGGTCGTCT
AGATAAATCAATAGCTCAATGGACTTTTCATCTAACTCTTTCAGTGTTATATTCCTCGAAAGAGGACCTCAGAACCGCTGCTTGTAACTTTTGGTGCTCC
GTTGTTCAACTTGATCTGAAGGATAAGAAGCAGCCCAGTGGGATTAAGTGGCTCCCGAGTTACTCTGATCTTAAATCAGCTCTTGACATATACGGGTTTC
GTTTAAACGTTCTGCTGGAGGTAGAGTCAGCAATTTCTGGTAATCACAATATAGCGCCGCCTGATAATATTCAAATGTGGATAAAGTTCATAGCTGTCTG
CTGTCGAGTAAGGAATAAAAGGTGCATCTTTTCATCGTCAGAGGCAGAAAGTTTACTGGAAGTCATAATTCTCCTGTCTCTGGACCGTCAGCTCGAAGGA
ATCCTGGTACTTCTCTATGAAAGTGTGCAATCCGTCATCAATTACTTTACAGAAGCAGAATGGCCCGAATCGTGTCTAAATGTTGCACGATCTCTTGCTT
CCAGGGTTCCAAAGGACTTGAACTGCTTAAGAACAGTGGAATGCATACCTGGACTAACCGCTCGTTCCAACAACCTGAGAGCTGAACTTTCCCATCAACT
TCTGCTAAATTGTTTCGATAAGGCAACAAATGACCAGGAGATCCTGACCGGTCTGATCGGCATTAACGTGAGGCAGAAGCAATGTGACCTGTTCAAGATG
TATATATACATCGTTCTGGGCGAGAATTGGCTCCTCTCCAGCAAAGTCCTCAGAGACAAGCCGGTAATCTGCGAGATGTGGGGAGTTTACTTGCGCAATT
GTTCTTGCCATATTGGTAGCTCGGATTTGAGGCCATATGCAGCAAAGGTTCGGTCTAGAGCTACTTATCTGATTCACAACACAACCAAGAAATATTGA
AA sequence
>Lus10021421 pacid=23179238 polypeptide=Lus10021421 locus=Lus10021421.g ID=Lus10021421.BGIv1.0 annot-version=v1.0
MDFMDTDDQLDFEFEDPLPAPDNTSMRRKKVVGLDDLLTDYYKEKSKVIERESKRAKAAKYYDSDESDEEALLSKTIADCHFKALLCIDEVGCVEENFTW
GMQVFGEKKSAPPLVFPELGSNSMLKSFMSNKLNSMVKLTVDEGEGFFEGLLLNGWLSEVVSRCGRLDKSIAQWTFHLTLSVLYSSKEDLRTAACNFWCS
VVQLDLKDKKQPSGIKWLPSYSDLKSALDIYGFRLNVLLEVESAISGNHNIAPPDNIQMWIKFIAVCCRVRNKRCIFSSSEAESLLEVIILLSLDRQLEG
ILVLLYESVQSVINYFTEAEWPESCLNVARSLASRVPKDLNCLRTVECIPGLTARSNNLRAELSHQLLLNCFDKATNDQEILTGLIGINVRQKQCDLFKM
YIYIVLGENWLLSSKVLRDKPVICEMWGVYLRNCSCHIGSSDLRPYAAKVRSRATYLIHNTTKKY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G28130 unknown protein Lus10021421
[exp]
0 1
AT3G01330 E2F_DP E2FF, E2L2, DEL... E2F-LIKE 2, DP-E2F-like protei... Lus10005840
[exp]
2.4 0.8801
AT4G11670 Protein of unknown function (D... Lus10029581
[exp]
4.2 0.8477
AT4G32570 ZIM TIFY8 TIFY domain protein 8 (.1) Lus10013138
[exp]
4.9 0.7977
AT1G70150 zinc ion binding (.1) Lus10029210
[exp]
7.6 0.7815
AT3G01330 E2F_DP E2FF, E2L2, DEL... E2F-LIKE 2, DP-E2F-like protei... Lus10039455
[exp]
8.1 0.7962
AT4G15900 PRL1 pleiotropic regulatory locus 1... Lus10037500
[exp]
8.1 0.8210
AT4G25450 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRI... Lus10038886
[exp]
13.4 0.7805
AT3G55460 SCL30, At-SCL30 SC35-like splicing factor 30 (... Lus10002699
[exp]
13.4 0.8001
AT5G49530 SIN-like family protein (.1) Lus10041724
[exp]
19.1 0.8100
AT3G55010 EMB2818, ATPURM... EMBRYO DEFECTIVE 2818, phospho... Lus10009823
[exp]
19.6 0.8043

Lus10021421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.