Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36870 395 / 2e-139 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT3G44990 394 / 6e-139 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT1G14720 205 / 3e-64 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT1G32170 202 / 3e-63 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 198 / 3e-61 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT3G25050 195 / 8e-61 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT2G01850 195 / 2e-60 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G10550 193 / 6e-60 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT5G57550 188 / 4e-58 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT5G57560 187 / 4e-58 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016144 [exp] 530 / 0 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 469 / 2e-168 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10037377 [exp] 463 / 3e-166 AT2G36870 422 / 9e-150 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10023009 [exp] 377 / 4e-132 AT2G36870 466 / 3e-167 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10001396 [exp] 376 / 1e-131 AT2G36870 460 / 8e-165 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026535 [exp] 373 / 1e-130 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 372 / 2e-130 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026536 [exp] 322 / 5e-110 AT2G36870 402 / 1e-141 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013823 [exp] 245 / 2e-81 AT2G36870 301 / 7e-104 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006600 [exp] 412 / 5e-146 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.006G122900 [exp] 396 / 6e-140 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.016G098600 [exp] 390 / 1e-137 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G163850 [exp] 216 / 3e-69 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.010G102300 [exp] 201 / 1e-62 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.003G097300 [exp] 200 / 4e-62 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.001G136100 [exp] 200 / 5e-62 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.008G138400 [exp] 198 / 1e-61 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.013G152400 [exp] 191 / 4e-59 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.014G115000 [exp] 189 / 3e-58 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10021422 pacid=23179194 polypeptide=Lus10021422 locus=Lus10021422.g ID=Lus10021422.BGIv1.0 annot-version=v1.0 ATGGCTACCACTAATGTTCTTCTTCCTTCTCTACTATTACCTCTCTTCTTGCTAGCCCAAGTACTCTTTGCTCAAGACTACCCCCCTAACCCCGGCTACT ACCCGAGCTCGAGAGCTCCTTCCATCCCTTTTGATAGAAGGTATCAAAACCGATGGGGTCCTCAGCACCAAAGGCTCGACCAGAACTCGGTGACCATTTG GTTAGACCGCTCTTCAGGAAGTGGGTACCAATCACTTAAGCCATACAAATCTGGCTACTTTGGTGCTTCCATCAAGCTTCATCCGGGCTATACTGCTGGA GTCATCACATCTTTCTACCTATCGAACAACGAGGTTCATCCAGGGAACCACGACGAGATCGACATTGAGTTCTTGGGAACCACGCCCGGGAAGCCGTACA CATTGCAGACCAATGTGTACGTTAGGGGAAGTGGGGATAGGAACATTGTAGGCAGAGAAGTGCAGTTCCATCTATGGTTTGATCCCACCCAAGACTTTCA CCACTATGCAATCTTGTGGGACCCTAATGAAATTATATTTTATGTGGACGATGTGCCAATCAGGAGGTATCCAAAGAAAAGCGATGCGACATTCCCACAA AGACCAATGTGGGTCTACGGGTCGATTTGGGATGCATCCGACTGGGCCACCGAGCACGGTAGGTACAAAGCTGACTACAATTACCAACCTTTCATTGGCC GGTACAAGGACTTCAAGATCGGAGGTTGCACCGCTTTTGCTAAACCAGGGTGCCAGCCGACTCCTGGGTCTCCGACAGGCTACGGGGAGCTAAGCCAACA ACAAATGGTGTCTATGTCTTGGGTGCAGAGGAACCATATGGTGTATGACTATTGCAATGACCCACAAAGGGACCATACTCACACTCCTGAGTGCTAG
AA sequence Show only first row Show all	>Lus10021422 pacid=23179194 polypeptide=Lus10021422 locus=Lus10021422.g ID=Lus10021422.BGIv1.0 annot-version=v1.0 MATTNVLLPSLLLPLFLLAQVLFAQDYPPNPGYYPSSRAPSIPFDRRYQNRWGPQHQRLDQNSVTIWLDRSSGSGYQSLKPYKSGYFGASIKLHPGYTAG VITSFYLSNNEVHPGNHDEIDIEFLGTTPGKPYTLQTNVYVRGSGDRNIVGREVQFHLWFDPTQDFHHYAILWDPNEIIFYVDDVPIRRYPKKSDATFPQ RPMWVYGSIWDASDWATEHGRYKADYNYQPFIGRYKDFKIGGCTAFAKPGCQPTPGSPTGYGELSQQQMVSMSWVQRNHMVYDYCNDPQRDHTHTPEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10021422 [exp]	0	1
					Lus10033259 [exp]	2.2	0.9269
AT5G02640			unknown protein		Lus10038485 [exp]	3.0	0.9110
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10042281 [exp]	3.3	0.8948
AT2G37030			SAUR-like auxin-responsive pro...		Lus10013808 [exp]	5.1	0.9226
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	15.7	0.9077
					Lus10005025 [exp]	15.7	0.8564
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	18.5	0.8623
AT1G54730			Major facilitator superfamily ...		Lus10029961 [exp]	21.4	0.9036
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10028030 [exp]	23.9	0.8836
AT2G37030			SAUR-like auxin-responsive pro...		Lus10026521 [exp]	24.4	0.8969

Compare expression of checked genes

Lus10021422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.