Plant FIBer expression Database

Lus10021424 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28105 150 / 7e-47 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016142
[exp]
318 / 1e-112 AT2G28105 168 / 6e-54 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G215300
[exp]
205 / 1e-68 AT2G28105 165 / 7e-53 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0021 OB PF08646 Rep_fac-A_C Replication factor-A C terminal domain
Representative CDS sequence
>Lus10021424 pacid=23179134 polypeptide=Lus10021424 locus=Lus10021424.g ID=Lus10021424.BGIv1.0 annot-version=v1.0
ATGGAAGGAAAAGGAGGAACAACGACGACGACCTGCACGGTGCTAGCAATCGATCAAACCAACCTCTCATACAGAGCCTGCTCAGTCTGCGAGCGAACCC
TCCCCGAAACTCCTGCCAATTCCGCCTGCAAATTCTGCTCCACCTTCAACGCCGGTCAGCCCGCGCCTCCGCCGGCCCGCTTCTTCCGCCTCCTCGTCTC
GATCGCCACGGACACCGAAGTTATAAACGTGATGTGCTTCGACAGAGCTGCTAGGGTTCTGATCGGCTGCTCCGCCCCCCAGCTCTTCCATTTCGCCAAG
CTTCATCCTTTCGCCGCGGTGAATTGCGGGAAAATGTTGGAAGGGGAGATGGTGAAGATGACACTGTCGAAGCCAAAGAATGGGAATGCTCAACATCTTA
GAGCAGTTTCCATTGTACCTTTGAGGACGGGTTTTCAGCCGGCGATTAAGAGCTTGAGGGAGTTGTACGAGTCCAGACCGGGTTCGGCTCTGCCTCCGAG
TTTGGGCTCGAATCCGTGA
AA sequence
>Lus10021424 pacid=23179134 polypeptide=Lus10021424 locus=Lus10021424.g ID=Lus10021424.BGIv1.0 annot-version=v1.0
MEGKGGTTTTTCTVLAIDQTNLSYRACSVCERTLPETPANSACKFCSTFNAGQPAPPPARFFRLLVSIATDTEVINVMCFDRAARVLIGCSAPQLFHFAK
LHPFAAVNCGKMLEGEMVKMTLSKPKNGNAQHLRAVSIVPLRTGFQPAIKSLRELYESRPGSALPPSLGSNP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G28105 unknown protein Lus10021424
[exp]
0 1
AT3G02120 hydroxyproline-rich glycoprote... Lus10015381
[exp]
1.0 0.8597
AT5G03670 unknown protein Lus10014378
[exp]
2.2 0.8175
AT3G04670 WRKY ATWRKY39, WRKY3... WRKY DNA-binding protein 39 (.... Lus10033857
[exp]
2.4 0.8520
AT4G11560 bromo-adjacent homology (BAH) ... Lus10008527
[exp]
2.4 0.8082
AT3G10490 NAC ANAC051, ANAC05... Arabidopsis NAC domain contain... Lus10038670
[exp]
3.5 0.8343
AT2G33845 Nucleic acid-binding, OB-fold-... Lus10015411
[exp]
4.2 0.8352
AT1G23890 NHL domain-containing protein ... Lus10030849
[exp]
5.7 0.7730
AT5G49210 unknown protein Lus10043148
[exp]
7.2 0.7530
AT3G58110 unknown protein Lus10002186
[exp]
8.4 0.7767
AT5G55160 ATSUMO2, SUMO2,... small ubiquitin-like modifier ... Lus10032561
[exp]
8.5 0.7974

Lus10021424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.