Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08125 380 / 2e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G73320 116 / 3e-30 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G44170 112 / 2e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G49560 69 / 3e-13 Putative methyltransferase family protein (.1) AT2G26200 67 / 2e-12 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G35987 55 / 2e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G50850 52 / 1e-07 Putative methyltransferase family protein (.1) AT1G79915 45 / 4e-05 Putative methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016141 [exp] 246 / 2e-80 AT1G08125 183 / 7e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10031894 [exp] 123 / 3e-33 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018640 [exp] 107 / 1e-27 AT5G44170 348 / 1e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039876 [exp] 94 / 3e-23 AT5G44170 244 / 5e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014309 [exp] 59 / 6e-10 AT5G49560 283 / 1e-95 Putative methyltransferase family protein (.1) Lus10024993 [exp] 60 / 8e-10 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10026017 [exp] 44 / 2e-05 AT5G49560 147 / 3e-45 Putative methyltransferase family protein (.1) Lus10041898 [exp] 44 / 9e-05 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10028446 [exp] 44 / 0.0001 AT4G35987 402 / 6e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006800 [exp] 423 / 5e-150 AT1G08125 370 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.017G153900 [exp] 119 / 1e-31 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.017G017000 [exp] 116 / 5e-31 AT5G44170 316 / 3e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G148200 [exp] 68 / 3e-13 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G068400 [exp] 66 / 2e-12 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.007G025600 [exp] 61 / 1e-10 AT5G49560 289 / 2e-98 Putative methyltransferase family protein (.1) Potri.006G225600 [exp] 58 / 3e-09 AT2G26200 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10021425 pacid=23179201 polypeptide=Lus10021425 locus=Lus10021425.g ID=Lus10021425.BGIv1.0 annot-version=v1.0 ATGGAAGCTGACAGGTTGAATTCTCCAAGTACATGTGCAGTTCTTCTTGAAGTAATGGGCCATCAACTGCAGTTCTCTCAGGATCCGAATTCCAAGCATC TGGGAACCACCGTTTGGGATGCATCAATGGTACTTGTCAAATATCTGGAAAAGAACTGCAGGAGGGGAAGATTCTGCCCGTCGAAACTGAAAGGAAAACG TGCTATCGAGCTCGGAGCAGGCTGTGGAGTAGCTGGATTTGGGATGGCGCTTCTAGGATGCGACGTGATATCGACAGACCAAGTCGAGGTGCTGCCACTG CTTATACGAAATGTGGAACGTAACACAGCTAGAGTCGTACAATCCGATCGTAATTCAGACTCCTTTGGCTCGATCGCTGCTGCTGAACTAGACTGGGGAA ATGAGGACCATATCCGAGCTGTTGAGCCGCCTTTCGACTACATTATTGGCACCGATGTGGTTTACGCGGAGCATCTTTTGGAGCCATTATTGCAGACCAT CTTCGCATTATCAGGGCCGAAAACCATCATCCTCTTGGGGCACGAAATTCGTTCTACGATCGTCCACGAGAAAATGCTTGCCATGTGGAGAAGCAACTTC GAGGTGAAAATCATTCCGAAAGCTAAGATGCATTATAAATTCCAGCATCCAAGCATTCAACTCTACATGATGGAAATGAAACACCCTGGTGGGAATGTAG GAGCCATAACTCAAGAAACTCGCGAGCAGAAACGGAATCCACCGGTGGAAGAGGACGGGGAGGAGGTAGAAGAACATTCCGAGGCTAGTAAAGCTATAGA GAATGCCGATGATCGACCGGGGGAAGGGAGTCTTACCGACTGGGAAACCAGGAGGATCGGTTCGATGGCTGCTAGGCTTCTTCAAGATGTCGAAATAAGT TGA
AA sequence Show only first row Show all	>Lus10021425 pacid=23179201 polypeptide=Lus10021425 locus=Lus10021425.g ID=Lus10021425.BGIv1.0 annot-version=v1.0 MEADRLNSPSTCAVLLEVMGHQLQFSQDPNSKHLGTTVWDASMVLVKYLEKNCRRGRFCPSKLKGKRAIELGAGCGVAGFGMALLGCDVISTDQVEVLPL LIRNVERNTARVVQSDRNSDSFGSIAAAELDWGNEDHIRAVEPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTIILLGHEIRSTIVHEKMLAMWRSNF EVKIIPKAKMHYKFQHPSIQLYMMEMKHPGGNVGAITQETREQKRNPPVEEDGEEVEEHSEASKAIENADDRPGEGSLTDWETRRIGSMAARLLQDVEIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08125			S-adenosyl-L-methionine-depend...		Lus10021425 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024626 [exp]	14.6	0.8946
AT1G31910			GHMP kinase family protein (.1...		Lus10012122 [exp]	17.3	0.8824
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10039680 [exp]	17.9	0.8262
AT5G56710			Ribosomal protein L31e family ...		Lus10015698 [exp]	25.2	0.8809
					Lus10041915 [exp]	25.2	0.8791
AT3G10120			unknown protein		Lus10017035 [exp]	33.9	0.8748
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10020499 [exp]	36.2	0.8755
AT2G41810			Protein of unknown function, D...		Lus10031067 [exp]	36.4	0.8719
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10003260 [exp]	36.5	0.8711
AT5G49040			Disease resistance-responsive ...		Lus10021082 [exp]	39.2	0.8759

Compare expression of checked genes

Lus10021425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.