Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64520 213 / 6e-67 ATXRCC2, XRCC2 homolog of X-ray repair cross complementing 2 (XRCC2) (.1), homolog of X-ray repair cross complementing 2 (XRCC2) (.2), homolog of X-ray repair cross complementing 2 (XRCC2) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016141 [exp] 114 / 3e-29 AT1G08125 183 / 7e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021426 pacid=23179187 polypeptide=Lus10021426 locus=Lus10021426.g ID=Lus10021426.BGIv1.0 annot-version=v1.0 ATGGCAGCCAGAGTTTGGATCGAGGATGACGAAACAGCGAAACAGATGCTTACCAGGGTTCTAACGAAATCCCCGCCATTCCTATTCCGTCCGCCTCTCC ACAGGCTCCCACTCCGTGTCGGGAACGTCGTCGAAATCGCCGGAGCTTCCCCGTCGGCCAAAACCACCATCCTAATCCACGCCGCGGTCGACTGCATTCT CCCGCGCGAGTGGAGAGGAGCCAGATACGGTGGGCTTGGGCGTACTGTCATGTTCGTCGACTTGGACTGCCGATTCGACGTGCTCCGACTGTCTAGCTTG TTAAGAGATCGAATCGGCGAGGCTAACGGCGGTGGAATTTGTGATGAAGAAGAATTGCACGAATTGTGTATGAGGAGGTTCCTTTACGTTCGTTGCTACG ACAGCTTCGAGCTTCTTGCCACGGTTAAGACGCTGCAGAATCAGATTCTGGAGGCGGCGGATGTTCATGGTGATGGTGGTGTTCATTGTTTGATGATTGA TAACATTGGGGCCTTTCATTGGATTGATAGAGCTGCTTCTTCTTCTTCCTCTGCATCGTTAGTAGCTGCTCTGGTAGGAAATGGAAGAAAGGGGCTTTCT CTCGACCAGATTTGGGAAGGTATGGTTATGGAGATCAGAAGGGTTCTTCTGGTTCATCCGATGCTTGTTATCACTACAAAAGCAACCGTTCTTGGGGATG CTGCTTCAGATTTGACGACGACTCAACCTTCGCATCATCGCGAGTTCATGCCTCCAGTGTGGCAGTCCTTTGTTTCGCATAGGCTTCACGTACGGGCTGG TATGGATCCAAATCGGTCTGTCTACTCGTTAGAGTGGCTTCTGCCTACTCACAGTTTCGTCGAGACGTTTGTAGTTAAGGATGAGGGTCTCTTTTCGTGT TCTGTAAGACAAATTCCAGACGGTTATAACTAA
AA sequence Show only first row Show all	>Lus10021426 pacid=23179187 polypeptide=Lus10021426 locus=Lus10021426.g ID=Lus10021426.BGIv1.0 annot-version=v1.0 MAARVWIEDDETAKQMLTRVLTKSPPFLFRPPLHRLPLRVGNVVEIAGASPSAKTTILIHAAVDCILPREWRGARYGGLGRTVMFVDLDCRFDVLRLSSL LRDRIGEANGGGICDEEELHELCMRRFLYVRCYDSFELLATVKTLQNQILEAADVHGDGGVHCLMIDNIGAFHWIDRAASSSSSASLVAALVGNGRKGLS LDQIWEGMVMEIRRVLLVHPMLVITTKATVLGDAASDLTTTQPSHHREFMPPVWQSFVSHRLHVRAGMDPNRSVYSLEWLLPTHSFVETFVVKDEGLFSC SVRQIPDGYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64520		ATXRCC2, XRCC2	homolog of X-ray repair cross ...		Lus10021426 [exp]	0	1
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10026465 [exp]	8.4	0.8085
AT5G49560			Putative methyltransferase fam...		Lus10026017 [exp]	19.1	0.7854
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016405 [exp]	32.6	0.7741
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	33.3	0.7319
AT3G02080			Ribosomal protein S19e family ...		Lus10010339 [exp]	38.3	0.7783
AT1G28530			unknown protein		Lus10015294 [exp]	40.7	0.7400
AT1G72040			P-loop containing nucleoside t...		Lus10008257 [exp]	41.0	0.7753
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041327 [exp]	41.8	0.7445
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	42.7	0.7351
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10001271 [exp]	46.7	0.7579

Compare expression of checked genes

Lus10021426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.