Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28100 633 / 0 ATFUC1 alpha-L-fucosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016140 [exp] 889 / 0 AT2G28100 644 / 0.0 alpha-L-fucosidase 1 (.1) Lus10031681 [exp] 441 / 4e-151 AT2G28100 485 / 2e-168 alpha-L-fucosidase 1 (.1) Lus10027390 [exp] 431 / 2e-147 AT2G28100 476 / 6e-165 alpha-L-fucosidase 1 (.1) Lus10027391 [exp] 56 / 1e-09 ND 44 / 4e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006900 [exp] 688 / 0 AT2G28100 704 / 0.0 alpha-L-fucosidase 1 (.1) Potri.015G133500 [exp] 452 / 5e-156 AT2G28100 502 / 3e-175 alpha-L-fucosidase 1 (.1) Potri.012G131400 [exp] 449 / 9e-155 AT2G28100 506 / 6e-177 alpha-L-fucosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01120 [flax] [poplar] Alpha_L_fucos Alpha-L-fucosidase CL0202 [flax] [poplar] GBD PF00754 [flax] [poplar] F5_F8_type_C F5/8 type C domain
Representative CDS sequence Show only first row Show all	>Lus10021427 pacid=23179249 polypeptide=Lus10021427 locus=Lus10021427.g ID=Lus10021427.BGIv1.0 annot-version=v1.0 ATGAAACCTATCTCCATCTTCGTCTTCCTCATCATCTTCCCGATCTCCAATTCGATCCTCCAAACACCGCCGCCGCTCCCAATCCTCCCAATCCCAACCT TCCCGCAGCTCCAATGGCAGCTTACCACCGAGATGTCAATGTTCCTCCACTTCGGGCCCAACACCTTCACAAACTCCGAGTGGGGCACGGGCCACGCCGA CCCGACCGTCTTCGCCCCGACCCAGCTCAACGCGACCCAGTGGGTGGAAGTCGCTAAAGAAACCGGGTTCAACAGAGTCATCCTCACGGCCAAGCACCAC GACGGATTTTGCCTCTGGCCGAGTGAGTATACGAATTACTCTGTGAAATCGAGCTCTCTGTGGAAGGATGGGAATGGCGATGTTGTAAAGGAGCTTGCTT TGGGGGCAGAGAAGGGTGGATTGGGGTTTGGGGTTTACCTATCGCCGTGGGATCGGCATGAGGATTGCTATGGGAAGACTGTTGAGTATAATGAGTTCTA TGTTGGGCAGATGACTGAGCTCTTGACCAGCTATGGAGAGATAAAGGAGGTTTGGTTAGATGGAGCCAAAGGGGAAGGTGCAAAAGACATGGACTATTAC TTTGAGAGATGGTTCAATCTGATCCATCAGCATCAGCCAAAGGCTGTCATATTCTCCGATGCCGGGCCCGACACCAGATGGATCGGTGACGAAGGTGGCG TTGCTGGCTCCACTTGCTGGTCTCTCTTCAATCGCAGCGATGCCACGATCGGTGGCACTGACACCCTGTACTCGCAAAACGGAGACCGGTACGGGCACGA TTGGGTGCCCGCAGAATGCGACGTCTCGATCCGACCCGGTTGGTTCTGGCACCCGTCTGAGTCGCCCAAGTCAGCATTGCAGCTTCTGGACATATATTAC AAATCTGCAGGAAGAAACTGCCTACTCTTACTAAACGTCCCACCAAACTCTTCAGGCCTCATCTCACCCGAAGACATCCAAGTCCTCCGCGAATTCGCAA ACCTACGCCGATCCATATTTTCACATAATCTTGCTCAGAACGCCACCTTTCTTGCCAGTAGCACGAGAGGTGGGTCTCAAAATCTCCGTTTCGCCCCCAA CAACGTGTTGAAAGAAGGCATCTATACGTACTGGGCGCCGGAGGAGAACCGGTCTTTCTCGACATTGTACATCGACCTTCGTGGTATGGTGTCGTTCAAC GTGATTCGAGTTCAGGAGCCGATCCACATGGGACAGCGAATCGTTGCCTTCCACGTGGAGGCTTTGAATCCAGATGGTGAGTGGATTCAAGTTGTTGAGG GAACTACGGTTGGATATCAAAGGCTGTTGCTTTTCCCAAGTGTCGTAGCTCGGCAGCTTAGGCTTGTTGTCGATCAGAGTCGGGCTGATCCGCTTATCTC GTATATCGGAGTTTACATAGATCGATATTTGAGCCCCGATCGAGTGATTCAGCTAAGTCCAGGCACCAGCCATTCTCATCATGTTGCTGTATTGTAA
AA sequence Show only first row Show all	>Lus10021427 pacid=23179249 polypeptide=Lus10021427 locus=Lus10021427.g ID=Lus10021427.BGIv1.0 annot-version=v1.0 MKPISIFVFLIIFPISNSILQTPPPLPILPIPTFPQLQWQLTTEMSMFLHFGPNTFTNSEWGTGHADPTVFAPTQLNATQWVEVAKETGFNRVILTAKHH DGFCLWPSEYTNYSVKSSSLWKDGNGDVVKELALGAEKGGLGFGVYLSPWDRHEDCYGKTVEYNEFYVGQMTELLTSYGEIKEVWLDGAKGEGAKDMDYY FERWFNLIHQHQPKAVIFSDAGPDTRWIGDEGGVAGSTCWSLFNRSDATIGGTDTLYSQNGDRYGHDWVPAECDVSIRPGWFWHPSESPKSALQLLDIYY KSAGRNCLLLLNVPPNSSGLISPEDIQVLREFANLRRSIFSHNLAQNATFLASSTRGGSQNLRFAPNNVLKEGIYTYWAPEENRSFSTLYIDLRGMVSFN VIRVQEPIHMGQRIVAFHVEALNPDGEWIQVVEGTTVGYQRLLLFPSVVARQLRLVVDQSRADPLISYIGVYIDRYLSPDRVIQLSPGTSHSHHVAVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10021427 [exp]	0	1
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10026813 [exp]	2.8	0.8606
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10037739 [exp]	6.6	0.7935
AT3G14067			Subtilase family protein (.1)		Lus10013154 [exp]	13.0	0.7670
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10034506 [exp]	13.1	0.7526
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10023153 [exp]	17.2	0.6473
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10006719 [exp]	20.1	0.8132
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10036069 [exp]	20.7	0.7997
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	21.2	0.8106
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10023936 [exp]	25.5	0.8053
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	25.8	0.8023

Compare expression of checked genes

Lus10021427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.