Plant FIBer expression Database

Lus10021429 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08110 297 / 3e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
AT1G67280 77 / 2e-17 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
AT1G11840 72 / 3e-15 ATGLX1 glyoxalase I homolog (.1.2.3.4.5.6)
AT2G28420 41 / 0.0001 GLYI8 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016138
[exp]
383 / 3e-137 AT1G08110 302 / 2e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Lus10043235
[exp]
78 / 4e-17 AT1G67280 551 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Lus10011115
[exp]
78 / 5e-17 AT1G67280 543 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Lus10003523
[exp]
72 / 6e-15 AT1G11840 495 / 5e-174 glyoxalase I homolog (.1.2.3.4.5.6)
Lus10002943
[exp]
71 / 7e-15 AT1G11840 447 / 5e-160 glyoxalase I homolog (.1.2.3.4.5.6)
Lus10038612
[exp]
66 / 1e-12 AT1G67280 455 / 4e-161 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Lus10039579
[exp]
44 / 1e-05 AT2G28420 248 / 2e-84 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1)
Lus10000007
[exp]
39 / 0.0004 AT1G11840 131 / 1e-39 glyoxalase I homolog (.1.2.3.4.5.6)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G007200
[exp]
327 / 4e-115 AT1G08110 318 / 6e-111 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Potri.004G214966
[exp]
105 / 1e-29 AT1G08110 110 / 3e-32 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Potri.018G084800
[exp]
78 / 4e-17 AT1G67280 553 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Potri.006G160600
[exp]
77 / 7e-17 AT1G67280 571 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Potri.004G013200
[exp]
75 / 3e-16 AT1G11840 496 / 8e-179 glyoxalase I homolog (.1.2.3.4.5.6)
Potri.018G042100
[exp]
70 / 4e-14 AT1G67280 488 / 3e-174 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Potri.009G055500
[exp]
50 / 1e-07 AT2G28420 229 / 1e-77 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0104 Glyoxalase PF00903 Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence
>Lus10021429 pacid=23179167 polypeptide=Lus10021429 locus=Lus10021429.g ID=Lus10021429.BGIv1.0 annot-version=v1.0
ATGGCTGCGACATCGGATTCGAAGGATTCGCCTGCTAACAACCCTGGTCTTCATACTTCGCCTGATGGAGCTACCAAAGGTTACTTCATGCAGCAAACTA
TGTTTCGGATTAAGGACCCGAAAGTTAGCCTTGATTTCTACTCTCGTGTACTGGGGATGTCTTTGCTGAAGAGGCTGGATTTTCCGGAGATGAAGTTTAG
CTTGTACTTCATGGGCTACGAGGATCCTGCATCTATTCCAAGTGATGCTGTAGAAAGAACCGTTTGGGCGTTCGCTAAGAAGGCTACTATTGAGCTAACA
CATAATTGGGGAACCGAAAGTGATCCCGAGTTTAAAGGATATCACAATGGCAATTCGGATCCTCGTGGCTTTGGACATATCGGTATAACTGTTGATGACA
CTTACAAGGCATGTGAGAGATTTGAAAGCCTCGGAGTGGAATTCGTTAAAAAGCCAGATGATGGAAAGATGAAAGGGTTAGCGTTTATCAAGGACCCTGA
TGGCTACTGGATCGAGATCTTCGACCTCAAGAACATGAAAGACGTAGCTAAAGCTGGTGTTGCTTGA
AA sequence
>Lus10021429 pacid=23179167 polypeptide=Lus10021429 locus=Lus10021429.g ID=Lus10021429.BGIv1.0 annot-version=v1.0
MAATSDSKDSPANNPGLHTSPDGATKGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDPASIPSDAVERTVWAFAKKATIELT
HNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDTYKACERFESLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLKNMKDVAKAGVA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G08110 lactoylglutathione lyase famil... Lus10021429
[exp]
0 1
AT1G56590 ZIP4 ZIG SUPPRESSOR 4, Clathrin ada... Lus10031432
[exp]
3.5 0.8641
AT3G47160 RING/U-box superfamily protein... Lus10001209
[exp]
4.5 0.9144
AT3G61370 Protein of unknown function (D... Lus10027936
[exp]
5.6 0.8450
AT4G01710 ARPC5, CRK CROOKED, ARP2/3 complex 16 kDa... Lus10042895
[exp]
5.8 0.8976
AT1G48160 signal recognition particle 19... Lus10043056
[exp]
9.5 0.8138
AT1G50440 RING/FYVE/PHD zinc finger supe... Lus10033381
[exp]
11.0 0.8829
AT5G10860 CBSX3 CBS domain containing protein ... Lus10019117
[exp]
11.6 0.8835
AT5G62980 FOLB2 Dihydroneopterin aldolase (.1) Lus10021252
[exp]
12.2 0.8598
AT5G13240 transcription regulators (.1) Lus10007961
[exp]
13.8 0.8800
AT5G64816 unknown protein Lus10009081
[exp]
14.9 0.8640

Lus10021429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.