Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05160 771 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 434 / 4e-147 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 408 / 6e-137 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 405 / 9e-136 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 404 / 4e-135 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 403 / 4e-135 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 389 / 3e-129 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G51680 389 / 3e-129 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT5G63380 388 / 7e-129 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 382 / 8e-127 4CL8 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016135 [exp] 1020 / 0 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 630 / 0 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 606 / 0 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 429 / 9e-145 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 429 / 3e-142 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 413 / 2e-138 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 410 / 2e-137 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10026143 [exp] 394 / 1e-131 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10015999 [exp] 392 / 2e-130 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112800 [exp] 835 / 0 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 823 / 0 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 443 / 1e-150 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 441 / 2e-149 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 436 / 9e-148 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 420 / 1e-141 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.017G033600 [exp] 400 / 5e-134 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.003G099700 [exp] 395 / 5e-132 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G169700 [exp] 395 / 6e-132 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.012G094800 [exp] 393 / 5e-131 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10021431 pacid=23179212 polypeptide=Lus10021431 locus=Lus10021431.g ID=Lus10021431.BGIv1.0 annot-version=v1.0 ATGGAGAAATCCGGCTACGGTCGCGACGGAATCTACCGATCCCTCCGACCAACTCTCTCCTTACCCAAAGACCCAAATCTCACTTTAGTCACTCACCTCT TCCGCAGATCGAATTCTTCATCTTCTTCCCACAAACCAGCCCTCCACGACTCCGATTCATCAACCACCCTCTCATTCTCCGACCTCAAATCCTCCGTCGC CTCATTCGCCGCCGGCCTCCGCCACTTAGGCATATCCAAAAGCGACGTCGTATTGATATTCGCCCCCAATTCCTACCAATTCCCAATCTGCTTCCTCGCC ATCACTTCCTTCGGCGCAATCGCCACCACCGCCAACCCTCTCTACACCACTGCTGAGCTCGGAAAACAGATCAAAGACTCCAATCCCAAGCTTGTCATCA CCGTCCCTGAGCTCTACGGGAAAGTCAAAAGTTTCAATCTTCCGGCGGTTTTTCTAGGTCAGAATCCGAATGTTCCGATCGGTGGGGAAGGAATCAAAAT CAGTACTTTCCGTCAAATTGTTGAGATGGGTTCGTCGGAAACGGAGTTTCCGACGGACGGTGTAAAGCAGAGTGATACGGCGGCGCTTTTATACTCGTCG GGGACGACTGGATTGAGTAAAGGCGTGATCTTGACTCACCGGAACTTCATTGCGGCAGCGACGATGATCACAATGGATCAGGATTCTTCGGGAGAAGTTG ACAACGTGTTTTTATGTTTTCTGCCGATGTTTCATGTGTTTGGATTGGCGGTGATTAGTTACGCGCAGTTGCAGAGAGGCAACTCGGTGGTGGTGATGGC AAAGTTTGAGTTTGAATTGGTTTTGAAAGCTGTGGAAAAGTTTAAGATTACTCATATGTGGGTTGTTCCGCCGGTGATACTTGCTCTGGCGAAGGAGAAG TTGGTAAAGAAGTATGATTTGTCGTCGTTGAAGCAGATTGGATCCGGCGCTGCTCCTTTGGGGAAAGATTTGATGGTCGAATGTGCTAGGAAGTTCCCTC ATGCTGCTATTCTTCAGGGATATGGAATGACTGAAACATGTTCGATCATCTCGGTTGAGAATCCGAGAGTAGGCCCTCGGAACTCCGGCTCAGCCGGAAC ACTCGTTGCAGGAGTCGAGAGCCAGATTATCAGTGTTGACACGATGAAGCCACTTCCTCCTAACCAGCTAGGCGAGATATGGGTTCGAGGACCCAACATG ATGCAAGGTTACTTCAACAATCCGGAGGCCACGAGGCAGACGATAGACAAGAAAGGATGGGTGCATACGGGAGACCTCGGGTACTTTGACGAGAACGGTC AGCTATATGTCGTGGATCGGATCAAGGAACTCATTAAGTACAAAGGATTCCAGGTCGCGCCAGCTGAGCTCGAAGGGCTACTTGTTTCCCACCCGGAAAT ACTAGATGCTGTGGTCATCCCGTTCCCCGATGCTGAAGCTGGTGAAGTTCCCGTTGCTTACGTGGTTCGCGATATAAACAGCTCGCTGACTGAAGTTGAT GTCCAGAAGTTCATTGCTGGTCAGGTTGCTCCATTCAAGAGACTGAAGAGGGTGACATTCATCAACACTGTCCCTAAATCAGCTTCAGGGAAAATCCTCA GGAGAGAGCTGATTGACAAAGTAAAGTCGAAAATGTGA
AA sequence Show only first row Show all	>Lus10021431 pacid=23179212 polypeptide=Lus10021431 locus=Lus10021431.g ID=Lus10021431.BGIv1.0 annot-version=v1.0 MEKSGYGRDGIYRSLRPTLSLPKDPNLTLVTHLFRRSNSSSSSHKPALHDSDSSTTLSFSDLKSSVASFAAGLRHLGISKSDVVLIFAPNSYQFPICFLA ITSFGAIATTANPLYTTAELGKQIKDSNPKLVITVPELYGKVKSFNLPAVFLGQNPNVPIGGEGIKISTFRQIVEMGSSETEFPTDGVKQSDTAALLYSS GTTGLSKGVILTHRNFIAAATMITMDQDSSGEVDNVFLCFLPMFHVFGLAVISYAQLQRGNSVVVMAKFEFELVLKAVEKFKITHMWVVPPVILALAKEK LVKKYDLSSLKQIGSGAAPLGKDLMVECARKFPHAAILQGYGMTETCSIISVENPRVGPRNSGSAGTLVAGVESQIISVDTMKPLPPNQLGEIWVRGPNM MQGYFNNPEATRQTIDKKGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPFPDAEAGEVPVAYVVRDINSSLTEVD VQKFIAGQVAPFKRLKRVTFINTVPKSASGKILRRELIDKVKSKM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05160			AMP-dependent synthetase and l...		Lus10021431 [exp]	0	1
AT5G01810		ATPK10, SnRK3.1...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030545 [exp]	8.9	0.8069
AT3G18060			transducin family protein / WD...		Lus10032444 [exp]	11.0	0.8148
AT4G11170			Disease resistance protein (TI...		Lus10004073 [exp]	12.9	0.6651
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	15.0	0.7774
AT4G25800			Calmodulin-binding protein (.1...		Lus10020686 [exp]	21.9	0.7911
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	23.1	0.7989
AT1G24480			S-adenosyl-L-methionine-depend...		Lus10036941 [exp]	23.7	0.7775
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	27.5	0.7585
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	28.1	0.7965
					Lus10037930 [exp]	28.8	0.7457

Compare expression of checked genes

Lus10021431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.