Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60800 135 / 1e-37 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G03380 106 / 6e-26 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G28090 100 / 5e-25 Heavy metal transport/detoxification superfamily protein (.1) AT2G36950 101 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1) AT3G02960 90 / 7e-21 Heavy metal transport/detoxification superfamily protein (.1) AT5G50740 76 / 9e-16 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT1G29000 66 / 3e-12 Heavy metal transport/detoxification superfamily protein (.1) AT5G24580 61 / 1e-10 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT4G38580 54 / 8e-09 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) AT5G63530 55 / 2e-08 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016133 [exp] 243 / 2e-78 AT5G60800 175 / 3e-52 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014421 [exp] 117 / 1e-29 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10021516 [exp] 111 / 7e-28 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10022617 [exp] 111 / 2e-27 AT2G36950 178 / 2e-51 Heavy metal transport/detoxification superfamily protein (.1) Lus10039074 [exp] 86 / 2e-19 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10038785 [exp] 86 / 2e-19 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10032245 [exp] 80 / 1e-18 AT2G36950 79 / 2e-18 Heavy metal transport/detoxification superfamily protein (.1) Lus10023924 [exp] 79 / 2e-16 AT5G03380 180 / 6e-54 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10037044 [exp] 69 / 3e-13 AT3G02960 137 / 6e-40 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G214700 [exp] 176 / 1e-52 AT5G60800 142 / 7e-40 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.009G007600 [exp] 159 / 3e-46 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G093100 [exp] 107 / 8e-27 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G124800 [exp] 107 / 8e-27 AT2G36950 135 / 2e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G017600 [exp] 81 / 5e-18 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G006600 [exp] 81 / 9e-18 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.006G006100 [exp] 72 / 3e-14 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.015G099500 [exp] 71 / 1e-13 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 71 / 1e-13 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.012G007300 [exp] 65 / 1e-11 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10021432 pacid=23179195 polypeptide=Lus10021432 locus=Lus10021432.g ID=Lus10021432.BGIv1.0 annot-version=v1.0 ATGCATTGCGAAGGCTGCGCTTCCAAGATCACCCGACTCACCCGCGGATTCGACGGGGTGGAATCGGTGAAGGCGGAGTCGGATTCGAACAAACTGACGG TGATCGGGAATGTAGATCCGGTGCAGATTCGTGACAAACTCCATGAGAAGACAAGGAAGAAGATCGAGCTCATCTCCCCTCAACCGAAGAAGGAAGACAA CAACAAGAACAACAACGACGGCGGAAAGAACAACGAGAAGAAATCCACCGGCGGCGATGGGGAGAAGAAGGCTGACGGCGGCGGCGAGCAGAAGAAACCT AAAGAGACGCCGGTCACCACGGCGGTTCTCAAGCTGGGATTCCATTGCCAAGGGTGCATCGAGAAGATCCACAAGGTTGTTTCCAAGACCAAAGGGGTGC ACGAGATAGTGGCGATGGACAAGGTGAAGGAGACGGTGACGGTGAAGGGGACGATGGACGTGAAGGCATTGGCGGAGGCGCTGAAGGAAAGACTGAAGCG GCCGGTGGAGATTGTTCCGCCGCCGAAGAAAGAGAAGGATGCTGCCGGTGGCGATAAGGATAAGGAGAAGGAAGGGGAGAAGAACAACAACAATAACAAC AACGGCGGTGGAAATGGCGGAGGAGGGAAGAAGAAGAAAGGCGGCGGCGGCGGGGATGGAGAAGGGCAAGGGCAGGAGAACAGCGGCGGAGGAGGAATGG AAGTTTCGAGAATGGAGTACATGGTCCAACCAGGGTTCGGTCCGGGATTCGTGGGTCAGCCGGTTTACGGGAATGGTTATTTCGGGCAGCCGGTTTACAA CGGGAATGGGTACATTGGGCAACCGGTTTACGAGTACGGGTATGGGCCGGTTCCTGGGTACCCGGTTCATATGAAGTTTAACGACGAGAACCCGAATGCT TGCTCTGTTATGTAA
AA sequence Show only first row Show all	>Lus10021432 pacid=23179195 polypeptide=Lus10021432 locus=Lus10021432.g ID=Lus10021432.BGIv1.0 annot-version=v1.0 MHCEGCASKITRLTRGFDGVESVKAESDSNKLTVIGNVDPVQIRDKLHEKTRKKIELISPQPKKEDNNKNNNDGGKNNEKKSTGGDGEKKADGGGEQKKP KETPVTTAVLKLGFHCQGCIEKIHKVVSKTKGVHEIVAMDKVKETVTVKGTMDVKALAEALKERLKRPVEIVPPPKKEKDAAGGDKDKEKEGEKNNNNNN NGGGNGGGGKKKKGGGGGDGEGQGQENSGGGGMEVSRMEYMVQPGFGPGFVGQPVYGNGYFGQPVYNGNGYIGQPVYEYGYGPVPGYPVHMKFNDENPNA CSVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60800			Heavy metal transport/detoxifi...		Lus10021432 [exp]	0	1
AT1G16210			unknown protein		Lus10022649 [exp]	2.0	0.9005
AT5G60800			Heavy metal transport/detoxifi...		Lus10016133 [exp]	2.0	0.8702
AT5G08060			unknown protein		Lus10040513 [exp]	3.2	0.8977
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10013848 [exp]	3.5	0.8867
AT4G13360			ATP-dependent caseinolytic (Cl...		Lus10019396 [exp]	7.2	0.8468
AT3G55780			Glycosyl hydrolase superfamily...		Lus10028258 [exp]	10.7	0.8189
AT1G02816			Protein of unknown function, D...		Lus10009854 [exp]	11.8	0.8701
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10034363 [exp]	12.0	0.8661
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10042268 [exp]	16.2	0.8217
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10017571 [exp]	16.3	0.8649

Compare expression of checked genes

Lus10021432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.