Plant FIBer expression Database

Lus10021434 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G19910 236 / 1e-79 MED31 SOH1 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016131
[exp]
329 / 1e-114 AT5G19910 254 / 6e-85 SOH1 family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G113400
[exp]
274 / 1e-94 AT5G19910 239 / 6e-81 SOH1 family protein (.1.2)
Potri.015G110900
[exp]
268 / 3e-92 AT5G19910 230 / 2e-77 SOH1 family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05669 Med31 SOH1
Representative CDS sequence
>Lus10021434 pacid=23179133 polypeptide=Lus10021434 locus=Lus10021434.g ID=Lus10021434.BGIv1.0 annot-version=v1.0
ATGGATTCTTCTAAAGAAACTGAGAACGTTTCAACAGCTCCGTCTTCGCCTAAGAAGGTATATAAGGATCCGGATGATGGACGGCAGAGGTTTCTTCTCG
AATTGGAGTTCGTACAATGTCTTGCTAATCCAACTTACATTCACTACCTAGCTCAGAACCGTTATTTCGAAGATGAAGCATTCATCGGCTACTTAAAATA
CCTCCAGTATTGGCAGCAACCAGAGTACATCAAGTTCATAATGTATCCTCACTGCTTATTCTTCCTAGAACTGCTCCAAAATGTAAACTTCCGCAACGCA
ATGGCTCACCCTGGCAACAAGGAATTGGCACACAGGCAGCAGTTCTACTACTGGAAGAACTACAGGAACAATCGGCTGAAGCACATTCTGCCAAGGCAAT
TTCCCGAGCCCACGGCAGCAGCAGCAACTCCTGCTTCTGCCCCTCCTCTGCCTCCCCCGCCTTCGACCATGCCTACTAGCCACGGTTCGACTATGAGTAT
GCCAGTTCCTTCAACGCATTCTCCAATGCCGTATGGAATGAACCCTGGATCGGGCCTCGGGAGGAACGAGATGAGGAATGCGGGCATGGATCGTCGGAAG
AGGAAGTAA
AA sequence
>Lus10021434 pacid=23179133 polypeptide=Lus10021434 locus=Lus10021434.g ID=Lus10021434.BGIv1.0 annot-version=v1.0
MDSSKETENVSTAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYIKFIMYPHCLFFLELLQNVNFRNA
MAHPGNKELAHRQQFYYWKNYRNNRLKHILPRQFPEPTAAAATPASAPPLPPPPSTMPTSHGSTMSMPVPSTHSPMPYGMNPGSGLGRNEMRNAGMDRRK
RK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G19910 MED31 SOH1 family protein (.1.2) Lus10021434
[exp]
0 1
AT3G04500 RNA-binding (RRM/RBD/RNP motif... Lus10000555
[exp]
2.6 0.7615
AT5G55160 ATSUMO2, SUMO2,... small ubiquitin-like modifier ... Lus10032561
[exp]
6.8 0.7590
AT4G40045 unknown protein Lus10034155
[exp]
9.6 0.7427
AT1G55365 unknown protein Lus10010316
[exp]
10.2 0.7145
AT3G07480 2Fe-2S ferredoxin-like superfa... Lus10009568
[exp]
10.7 0.7216
Lus10023658
[exp]
14.7 0.6425
AT3G02120 hydroxyproline-rich glycoprote... Lus10015381
[exp]
23.1 0.7395
AT5G54680 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic ... Lus10043076
[exp]
23.2 0.7020
AT1G65720 unknown protein Lus10020795
[exp]
23.5 0.6925
AT4G19190 zinc knuckle (CCHC-type) famil... Lus10037279
[exp]
26.1 0.6715

Lus10021434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.