Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28085 107 / 7e-31 SAUR-like auxin-responsive protein family (.1) AT3G09870 77 / 6e-19 SAUR-like auxin-responsive protein family (.1) AT4G34800 69 / 3e-16 SAUR-like auxin-responsive protein family (.1) AT2G21210 69 / 6e-16 SAUR-like auxin-responsive protein family (.1) AT4G38860 68 / 2e-15 SAUR-like auxin-responsive protein family (.1) AT4G34760 65 / 3e-14 SAUR-like auxin-responsive protein family (.1) AT4G34780 64 / 5e-14 SAUR-like auxin-responsive protein family (.1) AT4G34810 64 / 7e-14 SAUR-like auxin-responsive protein family (.1) AT1G75580 62 / 2e-13 SAUR-like auxin-responsive protein family (.1) AT4G34770 62 / 4e-13 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016130 [exp] 248 / 3e-86 AT2G28085 111 / 2e-32 SAUR-like auxin-responsive protein family (.1) Lus10016129 [exp] 199 / 1e-66 AT2G28085 115 / 4e-34 SAUR-like auxin-responsive protein family (.1) Lus10021436 [exp] 197 / 5e-66 AT2G28085 117 / 6e-35 SAUR-like auxin-responsive protein family (.1) Lus10001397 [exp] 83 / 3e-21 AT2G28085 69 / 8e-16 SAUR-like auxin-responsive protein family (.1) Lus10030263 [exp] 77 / 2e-18 AT3G09870 100 / 4e-28 SAUR-like auxin-responsive protein family (.1) Lus10004014 [exp] 74 / 1e-17 AT3G09870 101 / 1e-28 SAUR-like auxin-responsive protein family (.1) Lus10013819 [exp] 71 / 2e-16 AT3G09870 92 / 7e-25 SAUR-like auxin-responsive protein family (.1) Lus10026531 [exp] 71 / 2e-16 AT3G09870 89 / 7e-24 SAUR-like auxin-responsive protein family (.1) Lus10026532 [exp] 71 / 2e-16 AT3G09870 64 / 3e-14 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226400 [exp] 105 / 4e-30 AT2G28085 51 / 3e-09 SAUR-like auxin-responsive protein family (.1) Potri.016G092400 [exp] 101 / 2e-28 AT3G09870 108 / 8e-32 SAUR-like auxin-responsive protein family (.1) Potri.006G125100 [exp] 91 / 2e-24 AT3G09870 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 69 / 5e-16 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.009G127700 [exp] 69 / 5e-16 AT5G18080 114 / 1e-34 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) Potri.009G127600 [exp] 70 / 7e-16 AT5G18080 116 / 7e-35 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) Potri.004G164400 [exp] 67 / 2e-15 AT4G34760 182 / 4e-61 SAUR-like auxin-responsive protein family (.1) Potri.009G126000 [exp] 67 / 3e-15 AT4G34760 179 / 4e-60 SAUR-like auxin-responsive protein family (.1) Potri.004G165600 [exp] 66 / 4e-15 AT4G34770 118 / 4e-36 SAUR-like auxin-responsive protein family (.1) Potri.004G165300 [exp] 66 / 6e-15 AT4G38840 130 / 6e-41 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10021435 pacid=23179231 polypeptide=Lus10021435 locus=Lus10021435.g ID=Lus10021435.BGIv1.0 annot-version=v1.0 ATGGCTCATACTTCAAGCAAGAACAAAGGAAATGGAGGCATGACCAACCTCAAGATAGTGGCAAAGAAGCTTCAAAAGAGCCTCAATTCCTTGGGGAAGA AGACAACCAATGTCCCCGGGGACGTTAAAGAAGGCCATTTTGCAGTGTTAGCTGTGGAAGGAGTTGAAGAGCCCCGGAGGTTCATTGTACCCTTATCTTA TCTAACCCATCCTACGTTCTTGAGGCTCTTGGAGAAGGCAGCCGAGGAGTATGGGTTTGATGGCTATGAGGGTGCCCTTGTGGTCCCTTGTAGACCATCA GAGCTCGAGAGGATCCTGGCAGAGCAATGGAAAGAAACAAGGTCGACTACTCGGAGGAGGCACAATGACGGTAGTGATGGTAATTGGAGTAGTTCTTCGT GTAAGACTATGGTGCCAAGCTTTTGA
AA sequence Show only first row Show all	>Lus10021435 pacid=23179231 polypeptide=Lus10021435 locus=Lus10021435.g ID=Lus10021435.BGIv1.0 annot-version=v1.0 MAHTSSKNKGNGGMTNLKIVAKKLQKSLNSLGKKTTNVPGDVKEGHFAVLAVEGVEEPRRFIVPLSYLTHPTFLRLLEKAAEEYGFDGYEGALVVPCRPS ELERILAEQWKETRSTTRRRHNDGSDGNWSSSSCKTMVPSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	0	1
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	1.0	0.9974
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	1.4	0.9972
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008935 [exp]	2.4	0.9858
AT5G60330			unknown protein		Lus10018274 [exp]	3.0	0.9957
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	5.0	0.9861
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10010140 [exp]	8.1	0.9735
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10031607 [exp]	8.2	0.9866
AT4G03010			RNI-like superfamily protein (...		Lus10033744 [exp]	10.0	0.9814
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022506 [exp]	10.6	0.9784
					Lus10032468 [exp]	11.1	0.9754

Compare expression of checked genes

Lus10021435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.