Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28085 117 / 1e-34 SAUR-like auxin-responsive protein family (.1) AT3G09870 79 / 1e-19 SAUR-like auxin-responsive protein family (.1) AT4G38860 69 / 7e-16 SAUR-like auxin-responsive protein family (.1) AT4G34800 67 / 4e-15 SAUR-like auxin-responsive protein family (.1) AT2G21210 65 / 2e-14 SAUR-like auxin-responsive protein family (.1) AT4G34770 63 / 1e-13 SAUR-like auxin-responsive protein family (.1) AT4G34750 64 / 2e-13 SAUR-like auxin-responsive protein family (.1.2) AT2G46690 63 / 2e-13 SAUR-like auxin-responsive protein family (.1) AT3G61900 63 / 4e-13 SAUR-like auxin-responsive protein family (.1) AT3G20220 62 / 4e-13 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016129 [exp] 234 / 2e-80 AT2G28085 115 / 4e-34 SAUR-like auxin-responsive protein family (.1) Lus10016130 [exp] 197 / 6e-66 AT2G28085 111 / 2e-32 SAUR-like auxin-responsive protein family (.1) Lus10021435 [exp] 196 / 1e-65 AT2G28085 108 / 4e-31 SAUR-like auxin-responsive protein family (.1) Lus10001397 [exp] 77 / 1e-18 AT2G28085 69 / 8e-16 SAUR-like auxin-responsive protein family (.1) Lus10030263 [exp] 76 / 3e-18 AT3G09870 100 / 4e-28 SAUR-like auxin-responsive protein family (.1) Lus10004014 [exp] 74 / 2e-17 AT3G09870 101 / 1e-28 SAUR-like auxin-responsive protein family (.1) Lus10013819 [exp] 74 / 2e-17 AT3G09870 92 / 7e-25 SAUR-like auxin-responsive protein family (.1) Lus10026532 [exp] 72 / 7e-17 AT3G09870 64 / 3e-14 SAUR-like auxin-responsive protein family (.1) Lus10026531 [exp] 70 / 5e-16 AT3G09870 89 / 7e-24 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226400 [exp] 104 / 1e-29 AT2G28085 51 / 3e-09 SAUR-like auxin-responsive protein family (.1) Potri.016G092400 [exp] 100 / 1e-27 AT3G09870 108 / 8e-32 SAUR-like auxin-responsive protein family (.1) Potri.006G125100 [exp] 96 / 3e-26 AT3G09870 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 72 / 6e-17 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.009G127600 [exp] 66 / 2e-14 AT5G18080 116 / 7e-35 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) Potri.009G127700 [exp] 65 / 2e-14 AT5G18080 114 / 1e-34 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) Potri.009G127500 [exp] 63 / 1e-13 AT2G21210 128 / 5e-40 SAUR-like auxin-responsive protein family (.1) Potri.004G165300 [exp] 63 / 1e-13 AT4G38840 130 / 6e-41 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 63 / 1e-13 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.004G164400 [exp] 63 / 1e-13 AT4G34760 182 / 4e-61 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10021436 pacid=23179235 polypeptide=Lus10021436 locus=Lus10021436.g ID=Lus10021436.BGIv1.0 annot-version=v1.0 ATGGCTCCTACTACTAACAAGAACAAGGGAAGTGGGGGCATAATCAAGCTCAAGATAGTGGCAAAGAAGCTCCAAAAGAGCCTCAATTCCTTGGGGATCA AGAAGGAAAACAACGTCCCCGGGGACGTTAAAGAAGGCCACTTTGCGGTTTTAGCTGTTGAAGGAGTTGAAGAGCCCCAGAGGTTCGTGGTGCCCTTGAC TTATCTCACTCACCCTACGTTCCTGAGGCTCTTGGAGCAGGCTGCGGAGGAGTACGGGTTTGAAGGGCGCGAAGGCGCCCTTGCTGTCCCTTGTAGGCCT TCGGAGCTCGAGATGATCTTGTCGGAGCAATGGGAAGAAAGCATTGAGTCCTCAAGGGGAAGGATGATGAACAATGGTGGTGGTGGTGATAGTGATAATT GGGGTTCTTCCTCTTGTAAGACTATGGTGTCAAGCTTTTGA
AA sequence Show only first row Show all	>Lus10021436 pacid=23179235 polypeptide=Lus10021436 locus=Lus10021436.g ID=Lus10021436.BGIv1.0 annot-version=v1.0 MAPTTNKNKGSGGIIKLKIVAKKLQKSLNSLGIKKENNVPGDVKEGHFAVLAVEGVEEPQRFVVPLTYLTHPTFLRLLEQAAEEYGFEGREGALAVPCRP SELEMILSEQWEESIESSRGRMMNNGGGGDSDNWGSSSCKTMVSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021436 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10012570 [exp]	1.0	0.9447
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Lus10024491 [exp]	2.0	0.9172
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041674 [exp]	2.8	0.8860
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10017828 [exp]	3.2	0.8838
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016129 [exp]	3.5	0.8826
AT3G57910			D111/G-patch domain-containing...		Lus10021033 [exp]	5.3	0.8714
AT2G23440			unknown protein		Lus10002969 [exp]	5.7	0.9156
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026876 [exp]	5.7	0.8523
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041675 [exp]	6.6	0.8291
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10032159 [exp]	10.8	0.8062

Compare expression of checked genes

Lus10021436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.