Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36970 503 / 1e-175 UDP-Glycosyltransferase superfamily protein (.1) AT2G28080 495 / 9e-173 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 248 / 3e-76 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 243 / 2e-74 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22360 236 / 4e-72 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G78270 235 / 1e-71 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22370 233 / 9e-71 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22340 230 / 1e-69 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT3G02100 215 / 3e-64 UDP-Glycosyltransferase superfamily protein (.1) AT2G30140 210 / 2e-62 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016126 [exp] 744 / 0 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016128 [exp] 720 / 0 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021438 [exp] 706 / 0 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016127 [exp] 584 / 0 AT2G36970 426 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10010665 [exp] 255 / 3e-79 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10017542 [exp] 246 / 1e-75 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 244 / 4e-75 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 242 / 3e-74 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 240 / 2e-73 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G008100 [exp] 601 / 0 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G214100 [exp] 522 / 0 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 252 / 6e-78 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 252 / 6e-78 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.002G098400 [exp] 247 / 5e-76 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021000 [exp] 239 / 4e-73 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022500 [exp] 235 / 2e-71 AT1G22340 535 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.006G023700 [exp] 233 / 9e-71 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2) Potri.006G022300 [exp] 233 / 9e-71 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022600 [exp] 228 / 7e-69 AT1G22400 515 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10021437 pacid=23179188 polypeptide=Lus10021437 locus=Lus10021437.g ID=Lus10021437.BGIv1.0 annot-version=v1.0 ATGGCGACGGAGGAGACTAACGACGGTCGCCGGCATCGTAAGCCACACGCCATCGTCATCCCTTTCCCACTTCAAGGCCACGTCATCCCCGCAGTCCACC TCGCCATCAAGCTCGCCTCCGAAGGTTTCACTATCACTTTTATCAACACCCACTACATCCACCACAAGATCACCTCCTCATCGGCAGCCGGTGGCGCCGG AGACGACTTTTTCGCCGGCGTCCGGGAAACGGGGTTGGACATAAGGTACAAAACCGTTTCGGATGGGAAACCGCTCGGGTTCGACCGGTCGCTGAATCAC AATGAATTCATGGCTTCGGTTATGCAGGTGCTTCCTGTCCACGTGGAGGAGTTGGTCGCCGGGATGGTCGCCGCCGGTGAGGAGGAGGAGGAGAAGGTTA GTTGTTTGGTGGCCGACACTTTCTTTGTATGGTCGTCGAAGGTTGCGAAGAAGTTCGGGTTGGTTTACGTTTCGGTTTGGACCGAACCGGCTTTGGTTTT CACCTTGTACCATCATGTCCACCTTCTCCGTCAAAATGGCCACTTTGGTTGTCAAGGTCGAAGAGATGACCCAATAGACTATATACCGGGAGTAAAAATA ATCGAACCGAAAGACACTCCATCGTCTCTCCAAGGGGATGATGATGAGACTGTTATTGACCACCAAGTAGTCTTTGGAGCGATCCAAGATGCTAAGAGCG CGGATTTCATACTAGCCAACACCATCCAAGAGCTCGAACAAGACACGCTGGCGGGTTTAAAATTGGCTCATGAAGCCCAGGTCTATGCTATCGGCCCCAT TTTCCCAACCGAGTTCACTAAGAGTCTTGTCAGCACGAGTTTATGGTCTGAGTCGGATTGCACTCGATGGTTGAACTCCAAACCACTTGGCTCGGTCCTC TACGTGTCATTTGGGACATTTGCCCACATGGCTAAACCCGACCTTGTGGAGATAGCGCGTGGGTTCGCCCTCAGTGGGGTAAGTTTTCTCTGGACGTTGC GCAACGATATTGTGAGCTCGAACGATCCAGATCCTTTACCTTTCGGATTCAGAGAAGAGGTTTCCGATCGGGCAATGATTGTCGGGTGGTGTAATCAAAA GGAAGTGCTAGCCCACACGGCTATTGGAGGATTCTTAACCCACTGCGGGTGGAACTCGGTGCTGGAGAGCACATGGTGTGGAGTACCGATGTTATGTTTT CCTTTGTTTGTGGATCAGTTCACAAATCGAAAACTGGTGGTGGATGATTGGAAGGTCGGGATCAATCTTATTAGTGACCGGGCGGTTGTGACGAAAGAGG AAGTAGCGATGAATGCCAACCATCTGATGGTTGGAAAATCAAGAAATGAGTTAAAGGAAAGGATCAACGGGTTGCAGAAAATCTTGGTGGATGCAATCAA GCCTAGTGGATCGTCCAAGCAAAATTTTGCCCGATTTGTTAGAGAACTCAATGACACAATTATACAGAGAAAAGAAAGTTGGTAG
AA sequence Show only first row Show all	>Lus10021437 pacid=23179188 polypeptide=Lus10021437 locus=Lus10021437.g ID=Lus10021437.BGIv1.0 annot-version=v1.0 MATEETNDGRRHRKPHAIVIPFPLQGHVIPAVHLAIKLASEGFTITFINTHYIHHKITSSSAAGGAGDDFFAGVRETGLDIRYKTVSDGKPLGFDRSLNH NEFMASVMQVLPVHVEELVAGMVAAGEEEEEKVSCLVADTFFVWSSKVAKKFGLVYVSVWTEPALVFTLYHHVHLLRQNGHFGCQGRRDDPIDYIPGVKI IEPKDTPSSLQGDDDETVIDHQVVFGAIQDAKSADFILANTIQELEQDTLAGLKLAHEAQVYAIGPIFPTEFTKSLVSTSLWSESDCTRWLNSKPLGSVL YVSFGTFAHMAKPDLVEIARGFALSGVSFLWTLRNDIVSSNDPDPLPFGFREEVSDRAMIVGWCNQKEVLAHTAIGGFLTHCGWNSVLESTWCGVPMLCF PLFVDQFTNRKLVVDDWKVGINLISDRAVVTKEEVAMNANHLMVGKSRNELKERINGLQKILVDAIKPSGSSKQNFARFVRELNDTIIQRKESW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021437 [exp]	0	1
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013940 [exp]	1.4	0.8783
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10005754 [exp]	11.4	0.8619
AT5G15080			Protein kinase superfamily pro...		Lus10030668 [exp]	14.5	0.8364
AT3G10470	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021409 [exp]	16.2	0.8280
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	20.5	0.8594
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032743 [exp]	20.8	0.8688
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028075 [exp]	23.2	0.8153
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	26.4	0.8420
AT2G43120			RmlC-like cupins superfamily p...		Lus10001159 [exp]	29.9	0.8303
AT5G03380			Heavy metal transport/detoxifi...		Lus10014421 [exp]	34.4	0.8622

Compare expression of checked genes

Lus10021437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.