Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36970 535 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT2G28080 531 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 281 / 2e-89 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22400 281 / 3e-89 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 265 / 3e-83 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 265 / 6e-83 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22360 263 / 2e-82 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22370 251 / 1e-77 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT3G02100 223 / 2e-67 UDP-Glycosyltransferase superfamily protein (.1) AT2G30140 223 / 3e-67 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016126 [exp] 795 / 0 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 768 / 0 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016128 [exp] 767 / 0 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016127 [exp] 651 / 0 AT2G36970 426 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 273 / 3e-86 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 268 / 4e-84 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 264 / 1e-82 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 261 / 2e-81 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10017542 [exp] 260 / 6e-81 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G008100 [exp] 639 / 0 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G214100 [exp] 553 / 0 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 263 / 3e-82 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 263 / 3e-82 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G023700 [exp] 260 / 3e-81 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2) Potri.016G021000 [exp] 259 / 7e-81 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022500 [exp] 258 / 1e-80 AT1G22340 535 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.001G313000 [exp] 258 / 1e-80 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 258 / 3e-80 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 255 / 2e-79 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10021438 pacid=23179244 polypeptide=Lus10021438 locus=Lus10021438.g ID=Lus10021438.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAGTCTCGTGACGCCGGCGGCAACCACCATCGGAAGCCACACGCCATCGTCATCCCTTTCCCACTTCAAGGACACGTCATCCCCGCCGTCC ACCTGGCCGTCAAGCTCGCCTCCCAAGGTTTCACTATCACCTTCGTCAACACCGAATACATCCACCACAAGACCTCCTCCTCCGCTGGCGGATGCGACGA GGACTTTTTCGCCGGCGTCAGGAAATCTGGGTTGGATATAAGGTACAAAACCATATCGGACGGGTTGCCACTCCGGTTCGACCGGTCATTGAACCATGAC CAGTTCATGGCTTCTATGTCCCACGTGTTCCCTGCCCACGTGGAAGAGTTGGTCGCCGGGATGGTTGCCGCCGGTGAGGAGGAGAAAGTTAGCTGTTTGA TTACCGACACCTTCTTCGCGTGGCCGTCAAAGGTTGTCAAGAAGTTCGGATTGGTTTTCGTTTCGATTTGGACCCAACCGGCTTTGGTTTTCACCTTGTA CCATCATGTCCACCTTCTTCGCCAAAATGGTCACTACGGTTGTCAAGATCGAAGAGAGGACTCGATAGACTATATACCAGGAGTAAAAAAAATCGAACCA AAAGACTTGCCGTCAATTCTTCAAGAAATCGATGAGACCAGTCTTTTCATCCAAGCAACTTTCCATGTGCTTCAAGATGTCAAGAGTGCGGATTTTATAT TGGCCAATACGGTTCAAGAGCTTGAACATGACACGATCTCAAGTCTAAAACAAGCATACAACGACCAATTCTATGCTATCGGGCCTGTCTTCCCACCCGG GTTCACCATAAGCCCGGTAAGCACTAGTTTGTGGCCGGAGTCGGACTGCACCCAGTGGTTAAACTCTAAGCCAAGTGGCTCTGTCCTCTATGTCTCATTC GGGAGCTATGTCCACGTGACTAAGCCCGACCTCGTGGAGGTAGCATGTGGGATGGCCCTTAGTGGGATATGTTTTCTTTGGGTGTTGCGTGATGATATTG TGAGCTCGGAAGATCCGGACCCCTTGCCTGTTGGATTCAGAAAAGAGGTTTCGGATCGGGCGATGATTGTCGGGTGGTGTAGTCAGAAGGAAGTTCTAGC GCATGAGGCGATCGGAGGGTTCCTAACTCACTGTGGGTGGAACTCGGTGCTGGAGAGCACTTGGTGTGGAGTGCCAATGCTGTGTTTTCCTTTGTTTGTG GATCAGTTCACGAACCAAAAGCTAGTGGTGGATGATTGGAAGGTTGGGATTAACCTTGTTGACCAGACGATTGTGACGAAAGAAGAAGTATCGAAGAATG CCACTCGTTTAATGGTTGGAAAATCGAGAGACGAGCTCAAGGAAAGAATCAAAGAGGTGAACAGAATCTTGGTGGATGCACTCGAGCCTAATGGATCGTC CAAACAGAATTTGGTCCGATTCATTAGAGAACTCAAAGACATGATTATATATAGACACCAGTGA
AA sequence Show only first row Show all	>Lus10021438 pacid=23179244 polypeptide=Lus10021438 locus=Lus10021438.g ID=Lus10021438.BGIv1.0 annot-version=v1.0 MAEESRDAGGNHHRKPHAIVIPFPLQGHVIPAVHLAVKLASQGFTITFVNTEYIHHKTSSSAGGCDEDFFAGVRKSGLDIRYKTISDGLPLRFDRSLNHD QFMASMSHVFPAHVEELVAGMVAAGEEEKVSCLITDTFFAWPSKVVKKFGLVFVSIWTQPALVFTLYHHVHLLRQNGHYGCQDRREDSIDYIPGVKKIEP KDLPSILQEIDETSLFIQATFHVLQDVKSADFILANTVQELEHDTISSLKQAYNDQFYAIGPVFPPGFTISPVSTSLWPESDCTQWLNSKPSGSVLYVSF GSYVHVTKPDLVEVACGMALSGICFLWVLRDDIVSSEDPDPLPVGFRKEVSDRAMIVGWCSQKEVLAHEAIGGFLTHCGWNSVLESTWCGVPMLCFPLFV DQFTNQKLVVDDWKVGINLVDQTIVTKEEVSKNATRLMVGKSRDELKERIKEVNRILVDALEPNGSSKQNLVRFIRELKDMIIYRHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021438 [exp]	0	1
AT4G15545			unknown protein		Lus10034001 [exp]	1.4	0.8496
AT3G59060	bHLH	PIF5, PIL6	PHYTOCHROME-INTERACTING FACTOR...		Lus10029805 [exp]	3.5	0.8216
AT3G05170			Phosphoglycerate mutase family...		Lus10035350 [exp]	3.9	0.7843
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10039079 [exp]	4.9	0.8412
AT2G46220			Uncharacterized conserved prot...		Lus10012651 [exp]	7.4	0.8192
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10000864 [exp]	7.5	0.8103
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10030786 [exp]	10.5	0.8004
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10040270 [exp]	11.8	0.7591
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	13.6	0.8109
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	16.4	0.8020

Compare expression of checked genes

Lus10021438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.