Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28080 120 / 2e-32 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 100 / 5e-25 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 45 / 8e-06 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G22400 42 / 6e-05 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT5G38040 40 / 0.0002 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016126 [exp] 205 / 1e-64 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 155 / 1e-45 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016128 [exp] 152 / 1e-44 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016127 [exp] 144 / 3e-42 AT2G36970 426 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10021438 [exp] 143 / 4e-41 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10010943 [exp] 54 / 4e-09 AT1G22400 535 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10031388 [exp] 54 / 5e-09 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 50 / 2e-07 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 49 / 5e-07 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G214100 [exp] 127 / 2e-35 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G008100 [exp] 126 / 6e-35 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021439 pacid=23179154 polypeptide=Lus10021439 locus=Lus10021439.g ID=Lus10021439.BGIv1.0 annot-version=v1.0 ATGGCGGATGAGACACACGGCGGCGGCGCATACGCCATCGTGGTCACTTTCCCGCTTCAAGGCCATGTCATCCCCGCCGTCCACCTCGCCGTCAAGCTCG CCTCCCAAGATCGAAGAGATGATGTGATAGATTATGTACCAGAAATCAAAAGAATCAAACCGAAAGACACACCATCGCCTCATCAAGAGGATGATGAGAC CATCATTGTGCACCAAATAACATTTGGGACATTCCATGATGTCAGGAGTGTGGACTTTGCACTAGTTAACACGATCCAAGAGCTCGAACAAGACACATTT TTGGGTCTAGAACATGTCCATGAAGCCCAAGTCTACGCTATTGGGCCTATCTCCCCACGCGGGTTCACTACAAAGCCAATTACTATGAGCTTGTGGTCTG AGTCGGATTGCACCCAACGGTTAAACTCCAAGCCACCTGGCTCGGTCCTCTGTGTGTGA
AA sequence Show only first row Show all	>Lus10021439 pacid=23179154 polypeptide=Lus10021439 locus=Lus10021439.g ID=Lus10021439.BGIv1.0 annot-version=v1.0 MADETHGGGAYAIVVTFPLQGHVIPAVHLAVKLASQDRRDDVIDYVPEIKRIKPKDTPSPHQEDDETIIVHQITFGTFHDVRSVDFALVNTIQELEQDTF LGLEHVHEAQVYAIGPISPRGFTTKPITMSLWSESDCTQRLNSKPPGSVLCV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28080			UDP-Glycosyltransferase superf...		Lus10021439 [exp]	0	1
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	1.4	0.9532
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10012550 [exp]	2.6	0.9076
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10023512 [exp]	2.8	0.9235
AT2G24550			unknown protein		Lus10020142 [exp]	5.1	0.9293
AT2G22730			Major facilitator superfamily ...		Lus10003528 [exp]	5.2	0.9244
AT3G56460			GroES-like zinc-binding alcoho...		Lus10028988 [exp]	9.7	0.8878
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10031322 [exp]	10.2	0.9019
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	10.8	0.9014
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10022382 [exp]	11.2	0.9131
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	13.4	0.9172

Compare expression of checked genes

Lus10021439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.