Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28050 65 / 7e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G22960 62 / 1e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G32630 49 / 2e-07 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G01110 48 / 8e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16710 47 / 9e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 47 / 2e-06 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G55840 45 / 4e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16010 45 / 8e-06 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G11710 45 / 8e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 45 / 9e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039056 [exp] 52 / 4e-08 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042016 [exp] 51 / 5e-08 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018019 [exp] 51 / 6e-08 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10000364 [exp] 50 / 2e-07 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034616 [exp] 49 / 3e-07 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035735 [exp] 49 / 3e-07 AT4G11690 526 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10026465 [exp] 49 / 5e-07 AT1G05670 197 / 6e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10027916 [exp] 48 / 7e-07 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016511 [exp] 47 / 1e-06 AT5G59600 577 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069600 [exp] 52 / 3e-08 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G008900 [exp] 51 / 5e-08 AT2G32630 612 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.007G123600 [exp] 50 / 1e-07 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G121700 [exp] 47 / 1e-06 AT4G19890 923 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G015900 [exp] 45 / 4e-06 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 45 / 5e-06 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.009G105600 [exp] 45 / 8e-06 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G149800 [exp] 44 / 2e-05 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G237100 [exp] 44 / 2e-05 AT3G02010 967 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G030200 [exp] 44 / 2e-05 AT1G19720 985 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021445 pacid=23179210 polypeptide=Lus10021445 locus=Lus10021445.g ID=Lus10021445.BGIv1.0 annot-version=v1.0 ATGGATTCGATTCCTGAGTTGACGGAGAAGGAAGAGATGGATTTTGAGGAGAGGACGTATAAGATTGTGATCGACGGGTATGTAGTAAGATGCGGGAAGT TCGAGGAAGCCGAAAGGATGGTGTTTGAGATGAAAGATAGAGGCTTTGCAGTAGGACTCCATGTTTGGAATCCGATAGTGAGTGAATACTGTAAGAAAGG TTTCGTCGAGAAAGCGGGATCGTTGTTCGATAAGATGGTGAAGGGTGGGGTTGATTTTGATCAGGCTACGGAGATGATAGGGAGCAGGCGAGTAGTCGTT GGTGTTTCGATCTGCAGCGAGGTTTGTAGGCGGCTGTGTTTTTTGAATCGGTTTGATAAGGTTAAGGTGCTGGTGGATGTGATGCTGGCTGCGAATGATG CTGCTGCAAGGTTAGCAACAGAGATTTGCGAAGAAGTCTCGAAGCCAGATATTCGGGAGCCGGTGTAG
AA sequence Show only first row Show all	>Lus10021445 pacid=23179210 polypeptide=Lus10021445 locus=Lus10021445.g ID=Lus10021445.BGIv1.0 annot-version=v1.0 MDSIPELTEKEEMDFEERTYKIVIDGYVVRCGKFEEAERMVFEMKDRGFAVGLHVWNPIVSEYCKKGFVEKAGSLFDKMVKGGVDFDQATEMIGSRRVVV GVSICSEVCRRLCFLNRFDKVKVLVDVMLAANDAAARLATEICEEVSKPDIREPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28050			Pentatricopeptide repeat (PPR)...		Lus10021445 [exp]	0	1
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10033041 [exp]	7.5	0.7636
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003481 [exp]	16.5	0.7426
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10023765 [exp]	19.5	0.7381
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	23.2	0.7382
AT3G08890			Protein of unknown function, D...		Lus10012498 [exp]	28.4	0.7332
					Lus10043100 [exp]	36.9	0.7157
					Lus10038642 [exp]	37.0	0.7198
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025322 [exp]	37.6	0.7362
AT5G36930			Disease resistance protein (TI...		Lus10007812 [exp]	40.8	0.7126
					Lus10032968 [exp]	43.1	0.7090

Compare expression of checked genes

Lus10021445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.