Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45090 204 / 2e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60760 187 / 7e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016117 [exp] 349 / 2e-122 AT5G60760 268 / 2e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009200 [exp] 255 / 2e-80 AT5G60760 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G213500 [exp] 247 / 8e-77 AT5G60760 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021446 pacid=23179158 polypeptide=Lus10021446 locus=Lus10021446.g ID=Lus10021446.BGIv1.0 annot-version=v1.0 ATGTTTCAGCTCATTCAGAGGCAAGGCTCGTCCAGACATTTGATGGCGCTTCTCAATACCATGGCGCTTCCCAATCCCGACGGCTCTGTAGCCAAGGCTT GGCCTGTGGGTCCCGTGGATAAAAACGGGAAGCCTCTTCTTGGCCATGGTGTTGATAACGGGATTGGGGTTCCTATGTATGGTCCGCTGCAGATTGGAAA GGCTGAACCGGTGAATTTGCAGTTTGGTCACTTTGGGATTAGTGCTTGGCCGAGTGATGGCGGAACGAGCCATGCGGGGAGTATCGATGAGAGGGCTGAT GGGACTGATACTGGAAGTAAGTACCAGTCTTCGTGCTGTAGCTCGCCCAGGACCTCCGATGGACCTGCTAAGGAGCTCAAGGAGGAAACCTCAGTCCATG GCAGCGATGATGAGGAAGAAGTCGACGACGACCCACCCGAGATGGACAGTGATGAAGATCTTAGCGATAACGACGACAAGCTTGCACATGACGAGATTGG TTCAGTCGACGAGGAGTCGACAAAGTCAGACGAGGAGTACGATGACCTGGCAATGGAAGACATGGATGACAACGGGTACAGGACAGATGACGAAGAAGAG TCTGAGGACAAGCTACAGCCGATAGATGGATGGCTTCGGACTAGTGTCGGCAGACCCTCGACCGCTTCCTTCGGAGCAGGAGCGAGCGGTTCAGCGGAGG CGAGCCTTTGTGTTCTTACACTTCCCTCTTAG
AA sequence Show only first row Show all	>Lus10021446 pacid=23179158 polypeptide=Lus10021446 locus=Lus10021446.g ID=Lus10021446.BGIv1.0 annot-version=v1.0 MFQLIQRQGSSRHLMALLNTMALPNPDGSVAKAWPVGPVDKNGKPLLGHGVDNGIGVPMYGPLQIGKAEPVNLQFGHFGISAWPSDGGTSHAGSIDERAD GTDTGSKYQSSCCSSPRTSDGPAKELKEETSVHGSDDEEEVDDDPPEMDSDEDLSDNDDKLAHDEIGSVDEESTKSDEEYDDLAMEDMDDNGYRTDDEEE SEDKLQPIDGWLRTSVGRPSTASFGAGASGSAEASLCVLTLPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45090			P-loop containing nucleoside t...		Lus10021446 [exp]	0	1
AT1G18485			Pentatricopeptide repeat (PPR)...		Lus10036071 [exp]	2.0	0.8586
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	6.6	0.8051
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	6.7	0.8087
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	9.8	0.8128
AT4G33070			Thiamine pyrophosphate depende...		Lus10018181 [exp]	9.9	0.7353
AT2G45030			Translation elongation factor ...		Lus10039840 [exp]	15.8	0.7937
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	18.5	0.7780
AT2G31810			ACT domain-containing small su...		Lus10025595 [exp]	18.8	0.7492
AT4G27460			Cystathionine beta-synthase (C...		Lus10025651 [exp]	21.0	0.6885
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018393 [exp]	24.8	0.7741

Compare expression of checked genes

Lus10021446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.