Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60760 398 / 4e-134 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45090 385 / 2e-129 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G61450 42 / 0.0005 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016116 [exp] 598 / 0 AT5G60760 424 / 3e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031163 [exp] 43 / 0.0003 AT5G61450 573 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031740 [exp] 43 / 0.0003 AT5G61450 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009200 [exp] 412 / 7e-140 AT5G60760 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G213500 [exp] 405 / 1e-136 AT5G60760 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G125700 [exp] 45 / 4e-05 AT5G61450 543 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G108000 [exp] 44 / 7e-05 AT5G61450 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021447 pacid=23179215 polypeptide=Lus10021447 locus=Lus10021447.g ID=Lus10021447.BGIv1.0 annot-version=v1.0 ATGGCGGAGGTAGCGAAGGTGCTGTACATAGTGGTTCTCGATGGTGAGGATGGAAAAGGCTCGTTTCGGTATACTCGTCCGGTTCTGCAGAGCACTCTTC AGCTCATGGGATGCAAAGCTCGACATGCTTTCAAGATTAGCAGAAGGGTCTTTGAGATCATAAGAAATGCACCATCAATTGATACTCGACTGTTAAAAGA AGAGACTGACGTTTCAAGACAAAAGTTAGAGAAGGGGAATGCCAGCGTTACTGGGACATTCACTCTTGAGAAAAATGGCAAAAATAAAAGTATGCCATTC GAACTGTACAAGCGGCGCACCACACTGGTTGTTAGAAGAGAGACTTTCTTAGATATTGTCTGCGATGCACTTGCGGAATACAAGTATGTGGGTCCTAACC AGAGGGCGGATCTTGTTTTAGCATGCAGAATTCGGGAGAAGAAGGAGTCGGTAACTGTCCTGTTATGTGGCACCAGTGGATGCGGAAAATCTACCTTGTC TGCATTACTGGGAAGTAGATTGGGCATTACGACAGTTGTATCCACCGACTCGATCCGTCACATGATGAGGAGCTTTGTGGACGAGAAGCAAAACCCGCTT CTTTGGGCTTCGACGTACCATGCAGGGGAGTATCTGGATCCCGAGGCTGTCGCCGAAGCAAAGGCAAGACGGAAAGCCAAAAAATTAGCAGGCACTACCA AGGAAGAAGCAGCTGCCGACGGCTCTACTACTGGGAAGCATGATAGTCAAGCTTCAGAAGCTATGACTATTAGTCCGAAACAGATGGCTGTTGAAGGATT CAAAGCTCAGAGTGAAATGGTCATCGACAGCCTCGATCGCTTGATCACTGCATGGGAGGACAGGAAAGAATCCGTCGTCGTTGAAGGTGTCCACTTGAGC CTGAATTTCGTGGTAATGATTATACCTTCTGTTTCTTAG
AA sequence Show only first row Show all	>Lus10021447 pacid=23179215 polypeptide=Lus10021447 locus=Lus10021447.g ID=Lus10021447.BGIv1.0 annot-version=v1.0 MAEVAKVLYIVVLDGEDGKGSFRYTRPVLQSTLQLMGCKARHAFKISRRVFEIIRNAPSIDTRLLKEETDVSRQKLEKGNASVTGTFTLEKNGKNKSMPF ELYKRRTTLVVRRETFLDIVCDALAEYKYVGPNQRADLVLACRIREKKESVTVLLCGTSGCGKSTLSALLGSRLGITTVVSTDSIRHMMRSFVDEKQNPL LWASTYHAGEYLDPEAVAEAKARRKAKKLAGTTKEEAAADGSTTGKHDSQASEAMTISPKQMAVEGFKAQSEMVIDSLDRLITAWEDRKESVVVEGVHLS LNFVVMIIPSVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60760			P-loop containing nucleoside t...		Lus10021447 [exp]	0	1
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	1.4	0.9082
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024912 [exp]	3.5	0.9165
AT2G27460			sec23/sec24 transport family p...		Lus10004866 [exp]	3.5	0.8999
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	4.5	0.8910
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002569 [exp]	9.5	0.8812
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	9.7	0.8846
AT2G25320			TRAF-like family protein (.1)		Lus10002926 [exp]	13.7	0.8671
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	15.0	0.8488
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	18.5	0.8763
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	20.5	0.8312

Compare expression of checked genes

Lus10021447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.