Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60740 1473 / 0 ABCG28 ATP-binding cassette G28, ABC transporter family protein (.1) AT2G37010 1287 / 0 ATNAP12 non-intrinsic ABC protein 12 (.1) AT1G53390 1172 / 0 ABCG24 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31770 182 / 6e-48 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 180 / 3e-47 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT3G21090 175 / 2e-45 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT5G06530 173 / 1e-44 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT1G71960 171 / 5e-44 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT1G17840 171 / 5e-44 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT1G51500 171 / 5e-44 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016115 [exp] 1896 / 0 AT5G60740 1639 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10041325 [exp] 1647 / 0 AT5G60740 1548 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10023020 [exp] 1165 / 0 AT2G37010 1484 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10038714 [exp] 1158 / 0 AT1G53390 1310 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037981 [exp] 1155 / 0 AT1G53390 1330 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023199 [exp] 919 / 0 AT2G37010 1141 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10033315 [exp] 182 / 1e-49 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 183 / 4e-48 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 181 / 2e-47 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G169000 [exp] 1575 / 0 AT5G60740 1643 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.001G058900 [exp] 1547 / 0 AT5G60740 1672 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.006G126100 [exp] 1310 / 0 AT2G37010 1377 / 0.0 non-intrinsic ABC protein 12 (.1) Potri.010G225200 [exp] 1306 / 0 AT1G53390 1393 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G236500 [exp] 189 / 3e-50 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 187 / 1e-49 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.019G083000 [exp] 178 / 2e-46 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.013G111900 [exp] 178 / 2e-46 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.010G131900 [exp] 176 / 2e-45 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.009G051300 [exp] 174 / 4e-45 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10021448 pacid=23179251 polypeptide=Lus10021448 locus=Lus10021448.g ID=Lus10021448.BGIv1.0 annot-version=v1.0 ATGACCAACGAAGAGGATCCTCGCCGACGTCGGAAGCGTTCTCGTTCCGTTTCATCGTTACCGGCATTTTCATTGCTGCTACTGGTGGTGGTGGTGGTGT CATTTTCGCCGTCACCGGTCTCCTGCCAAAGATCCGCCGGCGGCGGTAGCGGTGGCGTTTCCAATTCCGGAGATATTCCTTCCTCCGCCACCGCTGCCGC AGCAGCAGGTGGAATGGGAAAAAATGACGCGAGGGATCAATTGGTGTCGCAGATGCTCTACAAGAAATTCGCCAATTTCACCGATATCTTCAAGGCCGAC ATCAAGAAGCATTTTGGCTTCTGCATCACCGACGTGGATGCAGATTGGAATGCGGCGTTCAATTTCTCCAAGAACACCAAATTCATAGCCAATTGCGCTA AGGCTACTAAAGGGGACATGAACCAGCGCATATGCACAGCAGCAGAGGTGAAGTTCTACTTCAACAGTTTCTTCCAGAAGGGCTCGAAAAAATCGAACTA TCTGCACCCGAACAAGAACTGTAACTTGACCTCGTGGGTCTCCGGGTGCGAGCCCGGGTGGGCTTGTAGCGTCAACAAAGGAACCAAGGCCGATCTCAAG AACTCAAAGGAAATGCCTCTCAGAACTTCCAACTGTGATGCTTGCTGTGAAGGCTTCTTCTGCCCTCATGGCCTTACTTGCATGATACCATGCCCATTGG GGAGTTACTGCCCACTGTCAAAGCTCAACAAGACTACAGGCATGTGTGACCCATACCATTACCAACTTCCAGCAGGGAAGCCTGACCATACCTGTGGAGG AGCCGATATCTGGGCCGATATCGTGAGGTGTTTCAAGTTAGCAACATGTGTACCTCAATCTGCAAACCAGAATATATCAGCTTATGGACTCTTGCTTTTT GCTGGACTAGGGTTCCTACTCATAATCATCTACAACTGCTCCGATCAAGTCATCGCAACTCGCGAGAAAAGACAAGCGAAAACCAGAGAGAAAGCGGTAC AAAGCGTAAAGGAGACTCAAGCGCGCGAGAAATGGAAGTCGGCCAAGGAGACAGCAAAGAAGACCGCCATGGATTTCCAAACCCAATTCTCGAGAACGTT CTCCCGCGTAAAATCGAAACGGGAAGACACAAGCTCGGGGACAAAGGGCAAGAAGAAAGACAAGGCAAACCTCACGAAGATGCTCCAAGAGATCGAGAAC AACCCGGATGGCCACCAGGGGTTCAACGTCGAGATCGGAGATAAAAACATCAAGAAACATGCCCCCAAGGGTAGGCAGCTGCACACTCAGAGCCAGATGT TCCGGTATGCTTACGGACAGATCGAGAAGGAGAAGGCGATGCAGGAGCAAAACAAGAACCTGACATTCTCCGGGGTTATATCGATGGCTAGCGATGTCGA GATGCGGAAGAGGCTTACTATTGAGGTTTATTTTAAGGATCTAACCCTAACTTTAAAAGGTAAGAACAAGCGTTTGTTGAGATGTGTTACTGGCAAGCTT TCACCGGGCCGAGTTTCGGCTGTTATGGGGCCATCTGGTGCTGGCAAAACTACCTTCCTCTCTGCCTTGACTGGCAAAGCACCTGGATGTAGTGTGTCCG GTATGGTTCTGGTCAACGGTAAAGCGGAACCGATCCAAGCGTACAAGAAGATCATCGGTTTCGTGCCTCAGGACGATATCGTCCATGGTAACTTGACCGT TGAAGAGAATCTTTGGTTCAATGCAAGCTGCAGGCTGTCTGCTGATCTACCAAAACCGGACAAGGTTCTAGTGGTCGAACGAGTGATAGAGTCCTTAGGC CTCCAACCGGTGAGGGACTCGCTCGTGGGGACTGTCGAGAAACGAGGGATTTCGGGTGGTCAACGGAAACGAGTGAACGTGGGAATGGAGATGGTGATGG AACCTTCACTTCTTATCCTAGATGAGCCAACATCCGGCTTGGACAGCTCGTCGTCCCAGCTACTGCTTAAGGCTCTTCGGCGCGAAGCTCTCGAAGGGGT GAACATTTGCATGGTTGTCCATCAACCAAGCTACACGCTATTCAGGATGTTCGACGACTTGATCCTTCTTGCGAAAGGTGGCTTGACAGCGTACCATGGG CCGGTAAAGAAAGTAGAAGAGTACTTTGCAGGACTCGGAATCACTGTTCCAGATCGAGTTAACCCACCGGATTACTTCATCGACATCCTCGAAGGTATAC TCAAACCTGCCTCAGGGGTACACTACAAGCAACTTCCGGTTCGATGGATGCTTCACAATGGATACCCGGTCCCCATGGACATGCTCCAGAGCACAGAAGG ACTCGGAGGGCCTGCAGGAGAAGGCTCTGGCCATGGAGAAGCAGGAAGGCTCAGCGAGGTGGGGTCGGAGGCTCAGTCGTTTGCTGGAGAGTTCTGGCAG GATATGAAGTCCAATGTTGAGATCAACAAGGATAACGTGCAACATAATTTCTTGCATACGGTCGATTTATCCGGTAGAGTGACTCCCGGGATCTTTCAGC AGTATAGATACTTCCTTGGCAGGGTCGGTAAGCAGAGATTACGAGAAGCAAGGACGCAAGCAGTAGACTATCTGATCTTATTGCTCGCCGGTATCTGCTT AGGAACGCTAGCAAAAGTGAGCGACGAGACTTTTGGAGCGCTTGGTTACACATATACCGTCATTGCAGTTTCTCTATTGTGCAAGATTTCGGCTTTGAGA TCATTTTCACTGGACAAGTTACACTACTGGAGAGAAAGAGGCTCCGGCATGAGTTGCTTGGCTTACTTCCTTGCGAAGGACACGATCGATCATTTCAACA CCATCATCAAGCCTATTGTCTACCTCTCCATGTTCTACTTCTTCAACAATCCGAGATCTAGCATCTACGACAACTACATCGTCTTGGTGTCCCTCGTTTA CTGCGTCACTGGCTTAGCCTATATCCTAGCTATTGCCTTCGAAGCCGGTCCAGCTCAATTGTGGTCAGTACTGCTTCCGGTCGTATTGACCCTGATTGCA ACCCGGAACGATGGTGGCTTGGCCGGTCGCCTCTCCGACGTATGCTACACCAAATGGGCGTTGGAAGCCTTTGTTATATCTAATGCCAAGAGATACAACG GAGTGTGGCTGATAACACGATGCGGTTCACTCATGGAAAACGGGTACGATCTCAACCATTGGAACCGTTGCCTAATCCTTCTCGGCCTAACCGGTTTCGC TAGTCGGGTCGTTGCCTTCATCGTCCTTGTTACCTGGCAGAAGAGGTGA
AA sequence Show only first row Show all	>Lus10021448 pacid=23179251 polypeptide=Lus10021448 locus=Lus10021448.g ID=Lus10021448.BGIv1.0 annot-version=v1.0 MTNEEDPRRRRKRSRSVSSLPAFSLLLLVVVVVSFSPSPVSCQRSAGGGSGGVSNSGDIPSSATAAAAAGGMGKNDARDQLVSQMLYKKFANFTDIFKAD IKKHFGFCITDVDADWNAAFNFSKNTKFIANCAKATKGDMNQRICTAAEVKFYFNSFFQKGSKKSNYLHPNKNCNLTSWVSGCEPGWACSVNKGTKADLK NSKEMPLRTSNCDACCEGFFCPHGLTCMIPCPLGSYCPLSKLNKTTGMCDPYHYQLPAGKPDHTCGGADIWADIVRCFKLATCVPQSANQNISAYGLLLF AGLGFLLIIIYNCSDQVIATREKRQAKTREKAVQSVKETQAREKWKSAKETAKKTAMDFQTQFSRTFSRVKSKREDTSSGTKGKKKDKANLTKMLQEIEN NPDGHQGFNVEIGDKNIKKHAPKGRQLHTQSQMFRYAYGQIEKEKAMQEQNKNLTFSGVISMASDVEMRKRLTIEVYFKDLTLTLKGKNKRLLRCVTGKL SPGRVSAVMGPSGAGKTTFLSALTGKAPGCSVSGMVLVNGKAEPIQAYKKIIGFVPQDDIVHGNLTVEENLWFNASCRLSADLPKPDKVLVVERVIESLG LQPVRDSLVGTVEKRGISGGQRKRVNVGMEMVMEPSLLILDEPTSGLDSSSSQLLLKALRREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLTAYHG PVKKVEEYFAGLGITVPDRVNPPDYFIDILEGILKPASGVHYKQLPVRWMLHNGYPVPMDMLQSTEGLGGPAGEGSGHGEAGRLSEVGSEAQSFAGEFWQ DMKSNVEINKDNVQHNFLHTVDLSGRVTPGIFQQYRYFLGRVGKQRLREARTQAVDYLILLLAGICLGTLAKVSDETFGALGYTYTVIAVSLLCKISALR SFSLDKLHYWRERGSGMSCLAYFLAKDTIDHFNTIIKPIVYLSMFYFFNNPRSSIYDNYIVLVSLVYCVTGLAYILAIAFEAGPAQLWSVLLPVVLTLIA TRNDGGLAGRLSDVCYTKWALEAFVISNAKRYNGVWLITRCGSLMENGYDLNHWNRCLILLGLTGFASRVVAFIVLVTWQKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10021448 [exp]	0	1
AT5G44410			FAD-binding Berberine family p...		Lus10042383 [exp]	4.5	0.7172
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10040791 [exp]	7.8	0.8032
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10037796 [exp]	9.8	0.6657
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	16.2	0.7753
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10001430 [exp]	17.5	0.7629
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10025016 [exp]	17.8	0.7696
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10025006 [exp]	21.6	0.7687
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	26.0	0.7729
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	34.5	0.7357
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	36.2	0.7576

Compare expression of checked genes

Lus10021448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.